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Results for "Pipeline"

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• • Neelam Jha@neelam

  

  Comment on "REAPR: a universal tool for genome assembly evaluation"

  ...t;_smalt.bam. This should take about twenty minutes. Finally we can use the smalt mapping, and the perfect mapping to run the reapr pipeline. Run reapr pipeline to get help on how to ru...

  1321 days ago

• • Jit@jit.aber

  

  Comment on "Coronavirus Resources !"

  SARS-CoV-2 SNP Calling pipeline https://github.com/DamienFr/CoV-homoplasy

  1444 days ago

• • Rahul Nayak@rahul

  

  Comment on "Genome in a Bottle (GIAB) Consortium"

  ...igh-confidence") variant calls and regions:We developed an integration pipeline to utilize sequencing data ge...lls and regions for use in benchmarking and validating variant calling pipelines. Currently, benchmark VCF an...

  1544 days ago

• • Jit@jit.aber

  

  Comment on "AfterQC: Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data"

  ...ication or it can be integrated into a larger pipeline solution. fastqp fastqp...C NGSQC: cross-platform quality analysis pipeline for deep sequencing data. NG...tput of statistics for use in quality control pipelines, and an optional HTML qualit...

  2122 days ago

• • Poonam Mahapatra@poonam

  

  Comment on "CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing."

  ...in order: Correct Trim Assemble By default canu runs these one after the other, but they can be run individually. An example “full pipeline” command would be:...

  2160 days ago

• • Neelam Jha@neelam

  

  Comment on "Important Journals, Blogs and Forums for Bioinformaticians"

  Molecular Phylogenetics and Evolution https://www.journals.elsevier.com/molecular-phylogenetics-and-evolution accept bioinformatics pipeline. Impact 4.4 

  2449 days ago

• • Jit@jit.aber

  

  Comment on "DBG2OLC:Efficient Assembly of Large Genomes Using Long Erroneous Reads of the Third Generation Sequencing Technologies"

  Metazoan genome assembly pipeline https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5100563/

  2558 days ago

• • Shruti Paniwala@shruti

  

  Comment on "Structural variation: the hidden genomic treasure"

  Hydra-SV The pipeline described below is meant to convey a general approach that they have found to be effective for discovering SV breakpoints with Hydra. However, it shoul...

  2687 days ago

• • Alok Prajapati@Alok

  

  Comment on "Commercial and public next-gen-seq (NGS) software"

  HiChIP: a high-throughput pipeline for integrative analysis of ChIP-Seq data http://www.biomedcentral.com/1471-2105/15/280/abstract

  3532 days ago

• • Martin Jones@martin

  

  Comment on "Commercial and public next-gen-seq (NGS) software"

  dDocent: a RADseq, variant-calling pipeline designed for population genomics of non-model organisms https://peerj.com/articles/431/

  3532 days ago

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