Results for "Platform"

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  • Cytoscape

    Cytoscape is an open source software platform for visualizing complex networks and integrating these with any type of attribute data. A lot of Apps are available for various kinds of problem domains, including bioinformatics, social network analysis, and semantic web.

    Tags: Bioinformatics, Cytoscape, Software, Platform, Visualization, Networks, GO

    2867 days ago

  • Anvio

    In a nutshell Anvi’o is an analysis and visualization platform for ‘omics data. Please find the methods paper here: https://peerj.com/articles/1319/ Anvi’o would not have been possible without the help of many people who directly or indirectly contributed to its development. ...

    Tags: Bioinformatics, Analysis, Visualization, Platform, Omics, NGS, Anvio

    2843 days ago

  • Pollux: platform independent error correction of single and mixed genomes

    Pollux: General-purpose error corrector that corrects errors introduced by Illumina, Ion Torrent, and Roche 454 sequencing technologies and can be applied to single- or mixed-genome data. In addition to correcting substitution errors, we locate and correct insertion, deletion, and homopolymer err...

    Tags: Pollux, Platform, Independent, Error, Correction, Single, Mixed, Genomes

    2506 days ago

  • Web Apollo: a web-based genomic annotation editing platform

    Web Apollo is the first instantaneous, collaborative genomic annotation editor available on the web. One of the natural consequences following from current advances in sequencing technology is that there are more and more researchers sequencing new genomes. These researchers require tools to desc...

    Tags: Web, Apollo, genomic, annotation, editing, platform

    2436 days ago

  • Delta: a new Web-based 3D genome visualization and analysis platform

    Delta is an integrative visualization and analysis platform to facilitate visually annotating and exploring the 3D physical architecture of genomes. Delta takes Hi-C or ChIA-PET contact matrix as input and predicts the topologically associating domains and chromatin loops in the ge...

    Tags: Delta, Web-based, 3D, genome, visualization, analysis, platform

    2291 days ago

  • VirtualFlow: a versatile, parallel workflow platform for carrying out virtual screening

     related tasks on Linux-based computer clusters of any type and size which are managed by a batchsystem (such as SLURM).  Currently, there exist two versions of VirtualFlow, which are tailored to different types of tasks: VFLP: VirtualFlow for Ligand Preparation VFVS :&nb...

    Tags: VirtualFlow, versatile, parallel, workflow, platform, carrying, virtual, screening

    1385 days ago

  • OrthoVenn3: an integrated platform for exploring and visualizing orthologous data across genomes

    OrthoVenn3 is a powerful tool for comparative genomics analysis, used as a web server for full genome comparisons, annotation, and evolutionary analysis of orthologous clusters across multiple species. It has already been used by thousands of users from over 60 countries.

    Tags: OrthoVenn3, integrated, platform, exploring, visualizing, orthologous, data, across, genomes

    332 days ago