Results for "Plot"

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  • GenomeRing: alignment visualization based on SuperGenome coordinates

    The number of completely sequenced genomes is continuously rising, allowing for comparative analyses of genomic variation. Such analyses are often based on whole-genome alignments to elucidate structural differences arising from insertions, deletions or from rearrangement events. Computational to...

    Tags: Bioinformatics, Plot, Synteny, Genome, Viewer, Comparative genomics

    2626 days ago

  • MafTools

    maftools - An R package to summarize, analyze and visualize MAF files. Introduction. With advances in Cancer Genomics, Mutation Annotation Format (MAF) is being widley accepted and used to store variants detected. The Cancer Genome Atlas Project has seqenced over 30 different cancers with sample...

    Tags: Bioinformatics, Maf, Tools, MafTools, Paint, Plot, Read

    2597 days ago

  • HivePlot

    The hive plot is a rational visualization method for drawing networks. Nodes are mapped to and positioned on radially distributed linear axes — this mapping is based on network structural properties. Edges are drawn as curved links. Simple and interpretable. The purpose of the hi...

    Tags: Bioinformatics, Analysis, Assembly, Genome, Visialization, Tool, View, Hive, Plot, HivePlot

    2597 days ago

  • ABACAS

    ABACAS is intended to rapidly contiguate (align, order, orientate) , visualize and design primers to close gaps on shotgun assembled contigs based on a reference sequence. It uses MUMmer to find alignment positions and identify syntenies of assembly contigs against the reference. The output is th...

    Tags: Bioinformatics, Analysis, Assembly, Genome, ABACAS, Plot, View

    2597 days ago

  • BRIG

    BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a focus on handling genome assembly data. The application is available at:http://sourceforge.net/projects/brig If you have any questions or comments, post th...

    Tags: Bioinformatics, Analysis, Assembly, Genome, BRIG, Plot, View, BLAST

    2597 days ago

  • PhenoGram

    With PhenoGram researchers can create chomosomal ideograms annotated with lines in color at specific base-pair locations, or colored base-pair to base-pair regions, with or without other annotation. PhenoGram allows for annotation of chromosomal locations and/or regions with shapes in different c...

    Tags: Bioinformatics, Analysis, Assembly, Genome, Chromosome, Plot, Phenome

    2578 days ago

  • Krona

    Krona allows hierarchical data to be explored with zooming, multi-layered pie charts. Krona charts can be created using an Excel template or KronaTools, which includes support for several bioinformatics tools and raw data formats. The interactive charts are self-contained and can be viewed with a...

    Tags: Bioinformatics, NGS, Reads, Krona, Visualization, View, Plot, Graph

    2564 days ago

  • gbtools: Interactive Visualization of Metagenome Bins in R

    We have developed gbtools, a software package that allows users to visualize metagenomic assemblies by plotting coverage (sequencing depth) and GC values of contigs, and also to annotate the plots with taxonomic information. Different sets of annotations, including taxonomic assignments from cons...

    Tags: Bioinformatics, gbtools, Genome, Tool, GC, Bin, Plot

    2559 days ago

  • UpSetR Shiny App!

    UpSetR generates static UpSet plots. The UpSet technique visualizes set intersections in a matrix layout and introduces aggregates based on groupings and queries. The matrix layout enables the effective representation of associated data, such as the number of elements in the aggregates and i...

    Tags: Bioinformatics, Analysis, Plot, UpSetR, Shiny, App, R

    2540 days ago

  • sankeyNetwork with networkD3

    You can also create Sankey diagrams with sankeyNetwork. Here is an example using downloaded JSON data: https://en.wikipedia.org/wiki/Sankey_diagram

    Tags: sankeyNetwork, networkD3, Visualization, Plot, java

    2183 days ago