Results for "Project"

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  • Fools guide

    This website and accompaning documents are intended as a tool to help researchers dealing with non-model organisms acquire and process transcriptomic high-throughput sequencing data without having to learn extensive bioinformatics skills. It covers all steps from tissue collection, sample prepara...

    Tags: Bioinformatics, NGS, Guide, Project, Tutorial

    2552 days ago

  • SIMBA: a Genome Assembly Project Management System

    SIMBA, SImple Manager for Bacterial Assemblies, is a Web interface for managing assembly projects of bacterial genomes. SIMBA was created to assist bioinformaticians to assemble bacterial genomes sequenced with NextGeneration Sequencing (NGS) platforms quickly, easily and effectively. SIMBA also ...

    Tags: SIMBA, Genome, Assembly, Project, Management, System

    1946 days ago

  • Simons Genome Diversity Project

    Complete genome sequences from more than one hundred diverse human populations All genomes in the dataset were sequenced to at least 30x coverage using Illumina technology. The sequencing reads were mapped and genotyped using a customized procedure that was optimized for population genetic analy...

    Tags: Simons, Genome, Diversity, Project

    1055 days ago

  • Reference Sequence Resource!

    The ENCODE project uses Reference Genomes from NCBI or UCSC to provide a consistent framework for mapping high-throughput sequencing data. In general, ENCODE data are mapped consistently to 2 human (GRCH38, hg19) and 2 mouse (mm9/mm10) genomes for historical comparability...

    Tags: ENCODE, Project, Genome, Reference, Data, Ftp, Download, Human

    925 days ago

  • Kubeflow: an open, community driven project to make it easy to deploy and manage an ML stack on Kubernetes

    The Kubeflow project is dedicated to making deployments of machine learning (ML) workflows on Kubernetes simple, portable and scalable. Our goal is not to recreate other services, but to provide a straightforward way to deploy best-of-breed open-source systems for ML to diverse infrastructures. A...

    Tags: Kubeflow, open, community, driven, project, easy, deploy, manage, ML, stack, Kubernetes

    1959 days ago

  • genoPlotR - plot gene and genome maps project!

    genoPlotR is a R package to produce reproducible, publication-grade graphics of gene and genome maps. It allows the user to read from usual format such as protein table files and blast results, as well as home-made tabular files. Features Linear representation of several segments of DNA Comp...

    Tags: genoPlotR, plot, gene, genome, maps, project, R

    1933 days ago

  • BioContainers

    BioContainers is a community-driven project that provides the infrastructure and basic guidelines to create, manage and distribute bioinformatics packages (e.g conda) and containers (e.g docker, singularity). BioContainers is based on the popular frameworks Conda, Docker and S...

    Tags: BioContainers, community-driven, project, provides, infrastructure, guidelines, create, manage, distribute, bioinformatics, packages

    1499 days ago

  • The Breeding API (BrAPI) project

    The Breeding API (BrAPI) project is an effort to enable interoperability among plant breeding databases. BrAPI is a standardized RESTful web service API specification for communicating plant breeding data. This community driven standard is free to be used by anyone interested in plant breeding da...

    Tags: Breeding, API, BrAPI, project, plant, databases

    1177 days ago