3931 days ago
List of In-silico Binding Site Prediction Tools
...added to fpocket recently. As the algorithm is very fast it can be used on a large scale level (PDB size for instance). If you use fpocket for publication, please cite : Vincent Le Gui...3728 days ago
Next generation sequencing in R or bioconductor environment
...overage information obtained by the chipseq package. Documentation [ Publication ] PICS The PICS package app...oth methods by identifying their consensus peak set. Documentation [ Publication ] ChIPpeakAnno The ChIPpeak...3609 days ago
Commercial and public next-gen-seq (NGS) software
...IX. CHiPSeq - Program used by Johnson et al. (2007) in their Science publication CNV-Seq - CNV-seq, a new meth...nt of Sequence Tags. Sidow and Myers Labs at Stanford. From the 2008 publication Genome-wide analysis of trans...3503 days ago
Software packages for next gen sequence analysis
.... * CHiPSeq - Program used by Johnson et al. (2007) in their Science publication * CNV-Seq - CNV-seq, a new me...nt of Sequence Tags. Sidow and Myers Labs at Stanford. From the 2008 publication Genome-wide analysis of trans...3227 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...artek Genomics Suite Cited in over 3,500 peer-reviewed scientific publications Workflows for microarray an...-Seq, DNA-Seq, and Methylation Powerful statistics and interactive, publication ready visualizations Support...2893 days ago
List of visualization tools for genome alignments
...esult drafts. Its integration in analysis pipelines allows the optimization of parameters, which leads to better results. But sometime, we need publication ready figure of genomes. Foll...2268 days ago