Results for "Python"

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  • Python and BioPython Tutorial

    A quickstart tutorial that allows to become familiar with the Python language. The exercises expect knowledge of basic concepts of programming. A group of 2nd year computer science students with no previous Python knowledge required 60'-90' to complete the exercises. With about 3 hours time, the ...

    Tags: Python, Bioinformatics, Tutorial

    1490 days ago

  • COSMOS, our workflow management system for NGS data

    COSMOS, our Python-based management system for implementing large-scale parallel workflows focusing on, but not restricted to, large-scale short-read "NGS" sequencing data is open-access published via Advance Access in Bioinformatics (Gafni et al. 2014).  It is also available for download fo...

    Tags: Bioinformatics, Computational Biology, NGS, COSMOS, Python, Workflow

    1156 days ago

  • Orange-Bioinformatics 2.5.34

    Orange Bioinformatics extends Orange, a data mining software package, with common functionality for bioinformatics. The provided functionality can be accessed as a Python library or through a visual programming interface (Orange Canvas). The latter is also suitable for non-programmers. Orange Bi...

    Tags: Bioinformatics, Cmputational Biology, Python, Orange, NGS, DataMining

    1081 days ago

  • Bioinformatics Scripts

    Some of the useful bioinformatics scripts. For example ... contig-stats.pl is a Perl script that will automatically describe features of a sequence assembly. http://milkweedgenome.org/?q=scripts

    Tags: Bioinformatics, Computational Biology, Education, Study, Script, Perl, Python

    942 days ago

  • BioScripts

    You are requested to please bookmark collection of bioinformatics tools, scripts, codes that can be pieced together in a very easy and flexible manner to perform both simple and complex bioinformatics tasks. The next-generation sequencing included whole genome sequencing(WGS), transcriptome sequ...

    Tags: Bioinformatics, Computational Biology, Education, Solution, Study, Script, Perl, Python, R, Code

    816 days ago

  • scikit-learn

    Machine Learning in Python Simple and efficient tools for data mining and data analysis Accessible to everybody, and reusable in various contexts Built on NumPy, SciPy, and matplotlib Open source, commercially usable - BSD license More at http://scikit-learn.org/stable/index.html  

    Tags: Bioinformatics, Computational Biology, Python, Machine Learning, Modules, Scikit, Learn

    569 days ago

  • bipype

    Bipype is a very useful program, which prepare a lot of types of bioinformatics analyses. There are three input options: amplicons, WGS (whole genome sequences) and metatranscriptomic data. If amplicons are input data, then bipype does reconstruction and pairs merging. After that biodiversity is ...

    Tags: Bioinformatics, Programming, Bipype, Python

    294 days ago

  • Tiny Python3.6 Notebook

    This is not so much an instructional manual, but rather notes, tables, and examples for Python syntax. It was created by the author as an additional resource during training, meant to be distributed as a physical notebook. Participants (who favor the physical characteristics of dead tree material...

    Tags: Python, Notebook, Tutorial, Learn

    110 days ago

  • HTSeq: Analysing high-throughput sequencing data with Python

    Overview Paper Documentation overview Author License Prequisites and installation Installation on Linux Installation on MacOS X MS Windows A tour through HTSeq Reading in reads Reading and writing BAM files Genomic intervals and genomic arrays Counting reads by gene...

    Tags: HTSeq, Analysing, high-throughput, sequencing, data, Python

    36 days ago