Results for "Python versions"
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List of bioinformatics open source projects/software.
Open source software is software that can be freely used, changed, and shared (in modified or unmodified form)...anguage toolkit BioPHP http://www.biophp.org/ PHP language toolkit Biopython http://biopython.o...3737 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...h/dee/page36926_fr.htmlEggLib EggLib is a C++/Python library and program package f...rees http://watson.hgen.pitt.edu/FFPopSim C++/Python library for population geneti...rtFREGENE is a forward-in-time simulator of inversions in population genetic data ht...3718 days ago
List of In-silico Binding Site Prediction Tools
Following are the list of In-silico Binding Site Prediction in Proteins tools CASTp : http://sts.bioengr.uic.edu/c...e) or the SiteHound-web server can be used to produce Affinity maps or MIFs. A python s...3725 days ago
Next generation sequencing in R or bioconductor environment
There are many R software and bioconductor packages for NGS data analysis, some of th...ia the Internet, so it's recommended that you cache the data locally, or check versions if your code will be adversel...3605 days ago
Commercial and public next-gen-seq (NGS) software
...ust error correction. An improvement on early versions of SSAKE. Velvet - Velvet i...anada's Michael Smith Genome Sciences Centre. Python/Win or Linux. Counting e.g. CH...Sciences Centre. JAVA/OS independent. Latest versions available as part of the Vanc...3500 days ago
- Subprocess is one of simplest way of running linux command from within python code Example: if you want to run fastqc for QC of fastq file: from subprocess import Popen,PIPE,call p=Pope...
3530 days ago
Using Interval Trees to Query Genome Annotations by Position
To work on query related to overlapping genomic features: use IntervalTree python pkg http://informatics.malariagen.net/2011/07/07/using-interval-t...enome-annotations-by-position/ http://hackmap.blogspot.de/2008/11/python-i...3530 days ago
Software packages for next gen sequence analysis
...ust error correction. An improvement on early versions of SSAKE. * Velvet - Velvet...anada's Michael Smith Genome Sciences Centre. Python/Win or Linux. Counting e.g. CH...Sciences Centre. JAVA/OS independent. Latest versions available as part of the Vanc...3223 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...nute to run an analysis REST and Python API to mange large projects....i in bacterial genome, written in Python and C Input: FASTQ referenc...umor/normal samples; dependent on python, bamtools, boost, and LAPACK...available in Perl, Python, and R versions; predicts liklihood of a gene...2889 days ago
Tool: Gene Set Clustering based on Functional annotation (GeneSCF)
----------- Gene Set Clustering based on Functional annotation &n...in real-time (v1.1 and above) by accessing source databases. With command-line versions of tools, as you know you can...2852 days ago
