Results for "Quality"

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  • Understanding Fastqc Output

    Understanding Following table and graphs Duplication level kmer profile per base GC content per base N content per base quality per base sequence content per sequence GC content per sequence quality sequence length distribution More at http://www.bioinformatics.babraham.ac.uk/projec...

    Tags: Bioinformatics, NGS, Assembly, Quality, FastQC, Tutorial

    681 days ago

  • ALE: a Generic Assembly Likelihood Evaluation Framework for Assessing the Accuracy of Genome and Metagenome Assemblies

    Assembly Likelihood Evaluation (ALE) framework that overcomes these limitations, systematically evaluating the accuracy of an assembly in a reference-independent manner using rigorous statistical methods. This framework is comprehensive, and integrates read quality, mate pair orientation and inse...

    Tags: Bioinformatics, FASTQ, NGS, ALE, Framework, Stats, Reads, Evaluation, Quality, Assembly

    671 days ago

  • Maq: Mapping and Assembly with Quality

    Maq stands for Mapping and Assembly with Quality It builds assembly by mapping short reads to reference sequences. Maq is a project hosted by SourceForge.net. The project page is available athttp://sourceforge.net/projects/maq/. Maq is previously known as mapass2. Run Maq Now...

    Tags: Bioinformatics, Maq, Variation, Mapping, Quality, Reads, SV, NGS, Genome

    460 days ago

  • Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

    Automatic Filtering, Trimming, Error Removing and Quality Control for fastq dataAfterQC can simply go through all fastq files in a folder and then output three folders: good, bad and QC folders, which contains good reads, bad reads and the QC results of each fastq fi...

    Tags: Automatic, Filtering, Trimming, Error, Removing, Quality, Control, fastq, data

    104 days ago

  • eQuant : energy-based quality assessment of protein

    Protein structures are of varying quality. Especially, in-silico modeled structures are prone to contain serious errors, which limit the usefulness and reliability of these particular protein structures.eQuant is a service for structure quality assessment of single proteins, which utili...

    Tags: eQuant, energy-based, quality, assessment, protein

    246 days ago

  • IONiseR: tools for the quality assessment of data produced by Oxford Nanopore‚Äôs MinION sequencer

    This package is intended to provide tools for the quality assessment of data produced by Oxford Nanopore’s MinION sequencer. It includes a functions to generate a number plots for examining the statistics that we think will be useful for this task. However, nanopore sequencing is an emergi...

    Tags: tools, quality, assessment, Oxford, Nanopore, MinION, sequencer, IONiseR, R

    94 days ago