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Taverna Workflow Management System
...op client application) and the Taverna Server (which allows remote execution of workflows). Taverna is also available as a Command Line Tool for a quick execution of workflows from a...3900 days ago
Hagfish - assess an assembly through creative use of coverage plots
...rence sequence and a paired end re-sequencing data set. Hagfish has more power the larger the insert size of the paired end library is. Quick links: Installation,Oper...2891 days ago
- ...impatient A typical Minia command line looks like: ./minia -in reads.fa -kmer-size 31 -abundance-min 3 -out output_prefix Type ./minia for a quick explanation of the parameters...
2689 days ago
- ...rs. This is the toolset for generating the synteny correspondences in Plant Genome Duplication Database. It is intended as an easy-to-use and quick way to identify conserved gen...
2676 days ago
GenomeRing: alignment visualization based on SuperGenome coordinates
...for the integration of additional information such as experimental data or annotations. However, providing a visualization that still allows for a quick and comprehensive interpretat...2648 days ago
Genome Annotation Transfer Utility (GATU)
Genome Annotation Transfer Utility (GATU) was designed to facilitate quick, efficient annotation of similar genomes using genomes that have already been annotated. For example, whene...2517 days ago
Dot, an interactive viewer for genome-genome comparison
...genomics. Dot supports the output of MUMmer’s nucmer aligner the most commonly used software method for aligning genome assemblies. A quick script called DotPrep.py conv...2287 days ago
FinisherSC:a repeat-aware tool for upgrading de novo assembly using long reads
...of raw reads and contigs consists of special characters/formats, FinisherSC/MUMmer may not parse them correctly. In that case, you want to have a quick renaming of the names of cont...2070 days ago
- CViT - Chromosome Viewing Tool. A collection of Perl scripts that enable quick visualizations of features on linkage groups, psuedochromosomes or cytogenetic maps. Intended for whole...
1934 days ago
Quick tour of Genetic Algorithms !
The R package GA provides a collection of general purpose functions for optimization using genetic algorithms. The package includes a flexible set of tools f...1920 days ago
