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Five unique traits of effective computational biologist
Bioinformatics research is driven by large set of software, scripts, and tools to analy...cessary. The good biological programmers learn new technical..." codes. According to my supervisor most of the computationa...distance view of an issue before deep diving into it. 5. Lov...3939 days ago
How to install Perl modules manually, using CPAN command, and other quick ways
As a bioinformatics programmer, and crunchy data analyser you need to install several perl modules and dependenci...XML-Parser-2.36.tar# cd XML-Parser-2.36Build the perl module:.../vendor_perl/5.10.0/usr/lib/perl5/vendor_perl /usr/lib/perl5/...nbsp; [5/5]Installed: perl-CPAN.i386 0:1.9205-31.fc9Dep...3938 days ago
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Well designed regular expression cheat sheet
In our computational biology work, we mostly play with DNA or AA string. For string based programming work this regular expression cheat sheet is really helpful. Keep it handy.3938 days ago
3941 days ago
Regular Expression Cheat Sheet
The Regular Expression are the sole of Perl language, and for bioinformatician it is just a magical stick to resolve gingatic string data. W...good and user friendly regular expression cheat sheet, hence writ...g, assertions and some sample patterns to get you started.3941 days ago
Which are the best statistical programming languages to study for a bioinformatician?
In Bio-informatics based genome sequencing and predicting metabolic pathways research jobs I used Matlab, SAS, SPSS, R and several Bioconductor packages. Matlab had a lot of...ramming skills. I am wondering what other people think is best? or ther...3940 days ago
Selecting between Python 2 and Python 3?
Which version is best for bioinformatician to work on?3940 days ago
Bio++ : C Language libraries for your biological need
...ways been a language that never attempts to tie a programmer down - it allows for...s in C - extending it by supporting features meant to encoura...ating Hidden Markov Models,Improved numerical tools (numerica...).Tree consensus methods, bipartitions, bootstrap value compu...3936 days ago
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Donnelly Centre of Cellular & Biomolecular Research (CCBR), Bader Lab
We study the organization and evolution of biolog...computational biology and bioinformatics techniques. We seek to accurately predict links, such as s...cs data like genome sequence and transcript profiles. We are inte...oftware. Predicting biologically relevant protein interactions...3936 days ago
3908 days ago
Bioinformatician become producer/director !!!
If a Bioinformatician starts producing Hindi Bollywood m...BLAST : Eak khoj Munna Bhai Promoter Gene se Genome tak. M...I wale Data le jayenge Raju ban gaya Genefinder. Har...gaya. BLASTana FASTAna. Hamari Sequence aapke pass hai. BL...f Rehta Hai PDB Ek Numbari Structure Dus Numbari GCG Karo S...3907 days ago
Perl Poem: Parse it in both Perl and English!
Larry's, er, corpus has fortunately been overshadowed by that of the reigning Perl Poet, Sharon Hopk...d "Camels and Needles: Computer Poetry Meets the Perl Program...both the Economist and the Guardian: #!/usr/bin/perl APPEAL...ength(of-days) # listen (a perl poem)# Sharon Hopkins# rev....3907 days ago
Personalised Medicine - Animation
Two animated case scenarios set now and in the future. These highlight potential differences in the way patients are treated now, and how they might be treated as healthcare becomes more tailored.3892 days ago
Influenza animation - flu virus mechanism
Animation of the mechanism of an influenza virus and how Crucell's antibodies target the HA1 proteins on the virus and prevent further spread of influenza....ent: Crucell Direction, Design & Animation: Daniel Lim, 2Preform Music & Sound Design: Ja...3841 days ago
Install BLAST in Ubuntu/Linux and Window !
...ll -c bioconda blast #Windows installation First: Download ftp://ftp.ncbi.n...blast+/2.7.1/ncbi-blast-2.7.1+-win64.exe with your web browser. #If that FTP...les/blast+/2.7.1/ncbi-blast-2.7.1+-win64.exe #Run this installer using the...1135 days ago
2905 days ago
Which of the following programming language is best for a bioinformatics beginner?
I will be doing NGS in the course of my research work and I will like to learn a programming language which is compatible with most bioinformatics tools or software. I basically want to...ions welcomed. Which languages would you recommend to a student wishing...3519 days ago
Which math/statistics programming language/application do you most frequently use in bioinformatics?
I'm doing a bit more statistical analysis on some bioinformatics things lately, and I'm curious if there are any programming languages that are particularly good for this NGS computation. What suggestions do you guys have? Are there any languages that have exceptionally good libraries?3515 days ago
Interview with a bioinformatician series ...
The aim of this series to interviews some notable bioinformaticians to get their views on various aspects of bioinformatics research. Hopefully these answers will prove u...ful to others in the field, especially to those who are just starting their bioinfor...3405 days ago
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinformatics specialist at the faculty of Gene Engineering and Biotechnology Institut...lexibility. As well known, there are highly diverse and compl...NSCLC will be determined and relations with the clinical, tu...rokaryotic TCS protein structure prediction and inhibitor des...2350 days ago
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Comment on "Basic command-line to run BLAST"
Understanding the parameters https://www.arabidopsis.org/Blast/BLASToptions.jsp386 days ago
Comment on "Benchmarking Perl Module !"
Benchmarking a Perl module involves measuring the performance of the module in term...re is a quick guide to benchmarking a Perl module using the B...ty of your Perl module. This program should take the form of...'MyModule' => \&benchmark_my_module, }); Analy...404 days ago