Results for "R"

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  • Circular plots in R

    Circular plots are useful to represent complicated informations. They are used in 2 specific cases: when you have long axis and numerous categories, and when you want to show relationships between elements. The circos gallery displays several examples of circular plots, what give...

    Tags: Circular, plots, R, circlize, Zuguang Gu

    2475 days ago

  • Circular Visualization in R

    This is the documentation of the circlize package. Examples in the book are generated under version 0.4.1. If you use circlize in your publications, I would be appreciated if you can cite: Gu, Z. (2014) circlize implements and enhances circular visualization in R. Bioinforma...

    Tags: Circular, Visualization, R

    2459 days ago

  • R tuorial

    R learning resources https://flowingdata.com/

    Tags: R, Learn

    2433 days ago

  • poRe: an R package for the visualization and analysis of nanopore sequencing data

    Motivation: The Oxford Nanopore MinION device represents a unique sequencing technology. As a mobile sequencing device powered by the USB port of a laptop, the MinION has huge potential applications. To enable these applications, the bioinformatics community will need to design and build a s...

    Tags: poRe, R, package, visualization, analysis, nanopore, sequencing, data

    2318 days ago

  • IONiseR: tools for the quality assessment of data produced by Oxford Nanopore’s MinION sequencer

    This package is intended to provide tools for the quality assessment of data produced by Oxford Nanopore’s MinION sequencer. It includes a functions to generate a number plots for examining the statistics that we think will be useful for this task. However, nanopore sequencing is an emergi...

    Tags: tools, quality, assessment, Oxford, Nanopore, MinION, sequencer, IONiseR, R

    2318 days ago

  • MinION_GC: An R script to do some QC on MinION data

    Other tools focus on getting data out of the fastq or fast5 files, which is slow and computationally intensive. The benefit of this approach is that it works on a single, small, .txt summary file. So it's a lot quicker than most other things out there: it takes about a minute to analyse a 4GB flo...

    Tags: MinION_GC, R, script, QC, MinION, data

    2307 days ago

  • R googleVis examples

    It may take a little while to load all charts. Please be patient. All charts require an Internet connection. These examples are taken from the googleVis demo. You can execute the demo via library(googleVis) demo(googleVis) For more details about the charts and further examples see the helpf...

    Tags: R, googleVis, examples

    2301 days ago

  • dupRadar package

    The dupRadar package gives an insight into the duplication problem by graphically relating the gene expression level and the duplication rate present on it. Thus, failed experiments can be easily identified at a glance

    Tags: dupRadar, package, R, rna-seq

    2244 days ago

  • d3Network:Tools for creating D3 JavaScript network, tree, dendrogram, and Sankey graphs from R.

    Mike Bostock’s D3.js is great for creating interactive network graphs with JavaScript. The d3Network package makes it easy to create these network graphs from R. The main idea is that you should able to take an R data frame with information about the relat...

    Tags: Tools, D3, JavaScript, network, tree, dendrogram, Sankey, graphs, R

    2184 days ago

  • ASAR: Advanced metagenomic Sequence Analysis in R

    An interactive data analysis tool for selection, aggregation and visualization of metagenomic data is presented. Functional analysis with a SEED hierarchy and pathway diagram based on KEGG orthology based upon MG-RAST annotation results is available. To read the manual, please click the link&nbs...

    Tags: ASAR, Advanced, metagenomic, Sequence, Analysis, R, NGS, Genomics, Genome

    2090 days ago