Results for "R"
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Perl Special Vars Quick Reference
$_ The default or implicit variable. @_ Subroutine parameters. $a$b sort ...exp (?{code}) result. ${^RE_DEBUG_FLAGS} Current value...nt page length. $- Number of lines left on page. $...ipient. @INC List of library paths. %INC Keys are...2629 days ago
Quick next generation sequencing (NGS) terms definition
fragment size: the Illumina WGS protocol generates paired-end reads from both ends of longer fragments. The lengths of the...minimum and maximum expected fragment size.discordant reads:&...e, if the read depth over a certain region deviates significa...2507 days ago
Awesome perl frameworks, libraries and software - PART 1
A curated list of awesome Perl frameworks, libraries and software. major/MySQLTuner-perl - MySQLT...- Using Plack and PSGI in Modern Perl Web Applications mschi...ng tool to automate and standardise bioinformatics analyses o...er Perl local::lib+cpanm helper script stevan/promises-perl&...2474 days ago
- It is often necessary to import sample textbook data into R before you start working on y...bsp;XLConnect package to read the entire workbook, and t...;> mydata = read.mtp("mydata.mtp") &nb...is separated by a special character, which usually is a comm...
2474 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
analog -- A feature that appears similar in two taxa which have originated from two different ancestors. ancestor -- Any organism, population, or species...ea that can be falsified by various scientific methods. ingr...they may not possess synapomorpies found in the crown group....2447 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq data (uses pseudoalignment for rapid determination of read com...the concept of “minimazers”, a special type of&nb...d estimation of phylogenetic trees using SNPs (based on ...2356 days ago
- ...have both Illumina and Nanopore data, then SPAdes remains a good option for hybri...--version prints version Input data: --12 &...ename> file with unpaired reads for single reads libr...;filename> file with trusted contigs --untrusted-con...
2336 days ago
Single Cell RNAseq data analysis tutorial !!
A major breakthrough (replaced microarrays) in the late 00’s and has been widely use...Useful for comparative transcriptomics, e.g. samples of...es https://github.com/nghiavtr/BPSC Sincera: A Computationa...ngle-cell RNA-Seq during differentiation http://biorxiv.org/...2336 days ago
- RNA-sequencing (RNA-seq) has a wide variety of applications, but no s...data analysis, including experimental design, quality contro...ection and eQTL mapping. A survey of best practices for RNA-...eq data analysis pipeline tutorial with an example RNA-Seq A...
2336 days ago
Edit distance application in bioinformatics !
There are other popular measures of edit distance, which are calculated using a different...ition of two adjacent characters; the longest comm...2 ); # ref to array of strings my $css_ary_ref = CS...edit distance, which is another algorithm based on edit weigh...2326 days ago
