Results for "RA"
Bio-Scripts
Install BLAST in Ubuntu/Linux and Window !
...nlm.nih.gov/blast/executables/blast+/2.7.1/ncbi-blast-2.7.1+-win64.exe #Run this installer using the defaults, it should put BLAST under C:\Program Files\NCBI\blast-2.7.1+1130 days ago
- ...the value of the variable and its length my $DNAlength = length($modifiedDNA); print "Modified DNA: $modifiedDNA has length $DNAlength\n"; #extract the second codon in $modifi...
2900 days ago
- ...; use warnings; my $DNA = "GATTACACAT"; #transcribe DNA to RNA - T changes...reverse complement of $DNA using substitution operator #first - reverse the sequ...? #find the reverse complement of $DNA using translation operator #first - re...
2900 days ago
Check if your coputer ready to use BioPerl
#!/usr/bin/perl use strict; use warnings; #bioperl example code use strict; use warnings; #make the bioperl module (class) accessible to your program use Bio::Seq; print"ok - ready to use Bio::Seq";2900 days ago
Parse a genbank file using regular expressions
...t for reading: $!"; # Flag for multiline translation; 1 means translation "in progress" $tra...s_start - $cds_end\n"; } elsif (/(\/translation=")(.*)/) { # protei...g; print "$protein\n"; $trans = 0; } else...2900 days ago
Perl script to Mutate a DNA Sequence
#!/usr/local/bin/perl -w # This script randomly mutates the DNA sequence and generates 10 successive mutation res...my($dna) = @_; my($position) = randomposition($dna); m...newbase; do { $newbase = randomnucleotide(); }...2899 days ago
Retrieve NCBI GenBank records with a range of accession numbers
...e URI::Escape; use LWP::UserAgent; use HTTP::Request::Common; my %param = ( query => undef...'q|query=s' => \$param{query}, 'o|output_file=...e} ) ) or !( defined( $param{database} ) ) or !( def...= $3; if ( defined( $param{maxRecords} ) ) { i...2899 days ago
A multilayer perceptron (MLP) neural network in Perl
...############################ #MLP neural network in Perl Original source code by Phil Brierley #Translated into perl - ccolbourn...include an input bias create an #extra input in the training data #...my $outPred; my $RMSerror; my @trainInputs; my @trainOutput;...2899 days ago
Extract a random sequence from a file
#!/usr/local/bin/perl -w use strict; use warnings; use autodie; use List::Util qw/ shuffle /; my $outputfile = 'randomoutput.txt'; open my $in_fh, '', $outputfile;...2898 days ago
- ...position # From here: https://www.biostars.org/p/6156/ my $chr = shift; my $pos = shift; my $size = shift; my $usage = "Example: perl extract_seq_from_ucsc.pl 14 482780...
2893 days ago
