Results for "RNA"
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MIT Computational Biology Group
My research group consists primarily of computer science graduate students and postdocs with expertise in algorithms, statistical inferences and machine learning, and sharing a passion for understanding fundamental biological problems. We work in a highly interdisciplinary environment at the i...Tags: Bioinformatics, Computational Biology, Genomics, RNAseq, NGS, Chromatin, RNA, Manolis Kellis, Chromosome, ENCODE
3410 days ago
- Focusing on understanding the molecular mechanisms that regulate mRNA translation, localization and stability and role of non-coding RNAs in this process. Up to 90% of human DNA is estimated to be transcribed into so called non-coding RNAs that are not translated into proteins. Many of them act a...
Tags: Bioinformatics, RNA, non-coding, neurological disorders, Marina Chekulaeva
3021 days ago
- They develop machine learning techniques to better understand chromatin biology. These models and algorithms transform high-dimensional functional genomics data into interpretable patterns and lead to new biological insight. https://www.pmgenomics.ca/hoffmanlab/
Tags: Bioinformatics, RNA, non-coding, functional genomics, chromatin biology, algorithms, Michael Hoffman
3021 days ago
- R-chie allows you to make arc diagrams of RNA secondary structures, allowing for easy comparison and overlap of two structures, rank and display basepairs in colour and to also visualize corresponding multiple sequence alignments and co-variation information.R4RNA is the R package power...
Tags: Bioinformatics, Analysis, NGS, R-chie, Genome, RNA, Plot, Visualize
2787 days ago
- The MIRO (the miRNA omics) pipeline is a flexible and powerful tool for the analysis of miRNA (or more generall short RNA) expression using short-read deep sequencing data. In its present implementation MIRO is especially adapted for the analysis of reads generated with the Illumina sequencing pl...
Tags: Bioinformatics, MIRO, Omics, Genome, RNA, miRNA
2754 days ago
Genome Assembly Tools and Software - PART2 !!
The genome assemblers generally take a file of short sequence reads and a file of quality-value as the input. Since the quality-value file for the high throughput short reads is usually highly memory-intensive, only a few assemblers, best suited for your assembly. For the sake of computational me...Tags: Bioinformatics, Genome, Assembly, RNA, DNA, Sequence, NGS
2670 days ago
Barrnap: Bacterial ribosomal RNA predictor
Barrnap predicts the location of ribosomal RNA genes in genomes. It supports bacteria (5S,23S,16S), archaea (5S,5.8S,23S,16S), mitochondria (12S,16S) and eukaryotes (5S,5.8S,28S,18S). It takes FASTA DNA sequence as input, and write GFF3 as output. It uses the new NHMMER tool that comes with HMME...Tags: Bioinformatics, RNA, Barrnap, 5S, 23S, 16S
2535 days ago
- We are a computational biology lab that develops novel methods for analysis of DNA and RNA sequences. Our research includes software for aligning and assembling RNA-seq data, whole-genome assembly, and microbiome analysis. We work closely with biomedical scientists to apply these methods to curre...
Tags: Bioinformatics, Steven, Salzberg, Lab, DNA, RNA, Assembly, Software, Mircobiome, NGS, Alignment, Genome
2532 days ago
