1280 days ago
Integrative RNA and ChIP-Seq analysis of regulatory T-cells
...ality in Strand NGS was used to find the regulatory role of FoxP3 in T-regulatory and T-helper cells. Learn how the gene expression profiles from RNA-Seq and FoxP3 DNA-protein binding...3180 days ago
Integrated mRNA and microRNA transcriptome analysis in Strand NGS
Using a nasopharyngeal carcinoma case study, this paper highlights the integrated transcriptome analysis capabilities of Strand NGS demonstrating the identification of...3180 days ago
Next Generation Sequencing (NGS) Tutorials
...AL, a primary analysis pipeline for NGS data http://bioinformatics.oxfordjournals.org/cgi/content/abstract/28/2/284?etoc RseqFlow: Workflows for RNA-Seq data analysis DOI: 10.1...3470 days ago
RNA Sequencing Helps Identify Functional Variants from GWAS
For Alzheimer’s and other complex disorders, mining the genome for disease-associated variants is no longer the obstacle. The challenge nowadays is figuring out h...3799 days ago
3544 days ago
1176 days ago
Does anyone have Nanopore latest updates?
There was a lot of buzz about Oxford Nanopore Technologies® is developing the GridION™ system and miniaturised MinION™ device. These are a new gene...3796 days ago
Bio++ : C Language libraries for your biological need
C has always been a language that never attempts to tie a programmer down - it allows for easy implementation, it comes with a genuinely useful standard library that ca...3930 days ago
Genome Assembly Tools and Software - PART2 !!
...2.6.1 – A LASSO Regression Approach to RNA-Seq Based Transcriptome AssemblyI...pts and estimate their expression levels from RNA-Seq reads. CEM 0.9.1 – Tra...Oases designed to heuristically assemble RNA-seq reads in the absence of a ref...2669 days ago
3930 days ago
Phylogenetic for Bioinformatics
Biologists estimate that there are about 5 to 100 million species of organisms living on Earth today. Evidence from morphological, biochemical, and gene sequence data s...3929 days ago
RNA-Seq Data Pathway and Gene-set Analysis Workflows
...Brouwer, 2013) workflows on RNA-Seq data pathway analysis and gen...w includes a new tutorial, “RNA-Seq Data Pathway and Gene-set Ana...l analysis using one of the major RNA-Seq analysis tools, DEseq/DEseq2,...torial. Although we focus on RNA-Seq data here, but pathway analys...3816 days ago
Deadly Human Pathogen Cryptococcus Sequenced
"Now, researchers have sequenced the entire genome and all the RNA products of the most important pathogenic lineage of Cryptococcus neoformans, a strain called H99. Th...3646 days ago
Postdoctoral position in bioinformatics @ Sweden
...d on methods development for and analysis of next generation DNA sequencing, in particular comparative metagenomics and gene expression analysis (RNA-seq). We have strong interdiscipl...3931 days ago
Clinical Genomics & Informatics Europe at Lisbon, Portugal
...ics & Informatics Europe conference will feature four main tracks on Clinical Exome Sequencing, High Scale Computing, Genome Informatics, and RNA-Seq and Transcriptome Analysis, a...3900 days ago
3923 days ago
3868 days ago
RNA interference (RNAi): by Nature Video
RNA interference (RNAi) is an important process, used by many different organisms to regulate the activity of genes. This animation explains how RNAi works and introduc...3876 days ago
3367 days ago
2900 days ago
Check if your coputer ready to use BioPerl
#!/usr/bin/perl use strict; use warnings; #bioperl example code use strict; use warnings; #make the bioperl module (class) accessible to your program use Bio::Seq; print"ok - ready to use Bio::Seq";2900 days ago
3929 days ago
RNA-Seq Data Pathway and Gene-set Analysis Workflows
It describe the GAGE (Luo et al., 2009) /Pahview (Luo and Brouwer, 2013) workflows on RNA-Seq data pathway analysis and gene-set analysis. The gage package (2.12.0) now includes a new tutorial, “RNA-Seq Data Pathway and Gene-set Analysis Workflows“. First cover a full workf...Tags: R, Bioconductor, RNA-seq, GAGE, Pathway
3816 days ago
Surrogate Variable Analysis (SVA)
The sva package contains functions for removing batch effects and other unwanted variation in high-throughput experiment. Specifically, the sva package contains functions for the identifying and building surrogate variables for high-dimensional data sets. Surrogate variables are covariates constr...Tags: RNA-seq, Genomics, R, Bioconductor
3458 days ago
Comment on "Tools for Sequence translation !"
Sequence translation is the process of converting a DNA or RNA sequence into its corresponding protein sequence. This is an important step in the an...404 days ago
Comment on "Tools for Differential expression analysis"
...: This R package is widely used for analyzing RNA-Seq data. It uses a negative bino...used for differential expression analysis of RNA-Seq data. It uses a generalized l...used for differential expression analysis of RNA-Seq data. It uses a non-parametri...404 days ago