1260 days ago
Integrative RNA and ChIP-Seq analysis of regulatory T-cells
...ality in Strand NGS was used to find the regulatory role of FoxP3 in T-regulatory and T-helper cells. Learn how the gene expression profiles from RNA-Seq and FoxP3 DNA-protein binding...3160 days ago
Integrated mRNA and microRNA transcriptome analysis in Strand NGS
Using a nasopharyngeal carcinoma case study, this paper highlights the integrated transcriptome analysis capabilities of Strand NGS demonstrating the identification of...3160 days ago
Next Generation Sequencing (NGS) Tutorials
...AL, a primary analysis pipeline for NGS data http://bioinformatics.oxfordjournals.org/cgi/content/abstract/28/2/284?etoc RseqFlow: Workflows for RNA-Seq data analysis DOI: 10.1...3450 days ago
RNA Sequencing Helps Identify Functional Variants from GWAS
For Alzheimer’s and other complex disorders, mining the genome for disease-associated variants is no longer the obstacle. The challenge nowadays is figuring out h...3779 days ago
3524 days ago
1156 days ago
Does anyone have Nanopore latest updates?
There was a lot of buzz about Oxford Nanopore Technologies® is developing the GridION™ system and miniaturised MinION™ device. These are a new gene...3776 days ago
Bio++ : C Language libraries for your biological need
C has always been a language that never attempts to tie a programmer down - it allows for easy implementation, it comes with a genuinely useful standard library that ca...3911 days ago
Genome Assembly Tools and Software - PART2 !!
...2.6.1 – A LASSO Regression Approach to RNA-Seq Based Transcriptome AssemblyI...pts and estimate their expression levels from RNA-Seq reads. CEM 0.9.1 – Tra...Oases designed to heuristically assemble RNA-seq reads in the absence of a ref...2649 days ago
3910 days ago
Phylogenetic for Bioinformatics
Biologists estimate that there are about 5 to 100 million species of organisms living on Earth today. Evidence from morphological, biochemical, and gene sequence data s...3909 days ago
RNA-Seq Data Pathway and Gene-set Analysis Workflows
...Brouwer, 2013) workflows on RNA-Seq data pathway analysis and gen...w includes a new tutorial, “RNA-Seq Data Pathway and Gene-set Ana...l analysis using one of the major RNA-Seq analysis tools, DEseq/DEseq2,...torial. Although we focus on RNA-Seq data here, but pathway analys...3796 days ago
Deadly Human Pathogen Cryptococcus Sequenced
"Now, researchers have sequenced the entire genome and all the RNA products of the most important pathogenic lineage of Cryptococcus neoformans, a strain called H99. Th...3626 days ago
Postdoctoral position in bioinformatics @ Sweden
...d on methods development for and analysis of next generation DNA sequencing, in particular comparative metagenomics and gene expression analysis (RNA-seq). We have strong interdiscipl...3911 days ago
Clinical Genomics & Informatics Europe at Lisbon, Portugal
...ics & Informatics Europe conference will feature four main tracks on Clinical Exome Sequencing, High Scale Computing, Genome Informatics, and RNA-Seq and Transcriptome Analysis, a...3880 days ago
3903 days ago
3848 days ago
RNA interference (RNAi): by Nature Video
RNA interference (RNAi) is an important process, used by many different organisms to regulate the activity of genes. This animation explains how RNAi works and introduc...3856 days ago
3347 days ago
2880 days ago
Check if your coputer ready to use BioPerl
#!/usr/bin/perl use strict; use warnings; #bioperl example code use strict; use warnings; #make the bioperl module (class) accessible to your program use Bio::Seq; print"ok - ready to use Bio::Seq";2880 days ago
3909 days ago
RNA-Seq De novo Assembly Using Trinity
Trinity, developed at the Broad Institute and the Hebrew University of Jerusalem, represents a novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-seq data. Trinity combines three independent software modules: Inchworm, Chrysalis, and Butterfly, applied seq...Tags: Bioinformatics, NGS, RNA-seq, Assembly, Trinity, Illumina
2928 days ago
Scallop: reference-based transcriptome assembler for RNA-seq
Scallop is an accurate reference-based transcript assembler. Scallop features its high accuracy in assembling multi-exon transcripts as well as lowly expressed transcripts. Scallop achieves this improvement through a novel algorithm that can be proved preserving all phasing paths from reads and p...Tags: Scallop, reference-based, transcriptome, assembler, RNA-seq, Tools
2152 days ago
Comment on "Tools for Sequence translation !"
Sequence translation is the process of converting a DNA or RNA sequence into its corresponding protein sequence. This is an important step in the an...384 days ago
Comment on "Tools for Differential expression analysis"
...: This R package is widely used for analyzing RNA-Seq data. It uses a negative bino...used for differential expression analysis of RNA-Seq data. It uses a generalized l...used for differential expression analysis of RNA-Seq data. It uses a non-parametri...384 days ago