Results for "RNA-Seq"

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  • RNA-Seq De novo Assembly Using Trinity

    Trinity, developed at the Broad Institute and the Hebrew University of Jerusalem, represents a novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-seq data. Trinity combines three independent software modules: Inchworm, Chrysalis, and Butterfly, applied seq...

    Tags: Bioinformatics, NGS, RNA-seq, Assembly, Trinity, Illumina

    631 days ago

  • Encode sequencing data freely available to download and use for academic means

    In Encode, regulatory elements investigated via DNA hypersensitivity assays, assays of DNA methylation, and chromatin immunoprecipitation (ChIP) of proteins that interact with DNA, including modified histones and transcription factors, followed by sequencing (ChIP-Seq). More information: h...

    Tags: Encode, UCSC, genome browser, Sequencing, RNA-Seq, Chip-Seq, Epigenomics, Methylation, histone modification, regulatory elements, HMM

    1372 days ago

  • New RNA Seq tool

    "By removing the time-consuming step of read mapping, the authors reported, Sailfish able to provide quantification estimates 20–30 times faster than current methods without loss of accuracy." Tool link: http://www.cs.cmu.edu/~ckingsf/software/sailfish/

    Tags: Sequencing, RNA-Seq

    1329 days ago

  • Rosalind Bioinformatics problems !!!

    Rosalind is a platform for learning bioinformatics and programming through problem solving. Take a tour to get the hang of how Rosalind works. http://rosalind.info/problems/list-view/

    Tags: Bioinformatics, Computational Biology, NGS, Genome, RNA-Seq, Algorithms, Online, Rosalind

    1092 days ago

  • Strand Life Sciences announces the release of Strand NGS v3.1 at ASHG 2017

    Strand Life Sciences announces the release of Strand NGS v3.1 at ASHG 2017 ORLANDO, USA, Oct 17, 2017/ PRNewswire/ Strand NGS now supports large scale RNA- and small-RNA-Seq and Unique Molecular Identifiers (UMIs) for DNA-, RNA-, and small-RNA-Seq. Strand Life Sciences announced the latest ver...

    Tags: Strand NGS, Strand Life Sciences, ASHG 2017, RNA-Seq, Unique molecular identifiers, UMIs

    52 days ago