RNA-Seq Data Pathway and Gene-set Analysis Workflows
It describe the GAGE (Luo et al., 2009) /Pahview (Luo and Brouwer, 2013) workflows on RNA-Seq data pathway analysis and gene-set analysis. The gage package (2.12.0) now includes a new tutorial, “RNA-Seq Data Pathway and Gene-set Analysis Workflows“. First cover a full workf...Tags: R, Bioconductor, RNA-seq, GAGE, Pathway
3796 days ago
Surrogate Variable Analysis (SVA)
The sva package contains functions for removing batch effects and other unwanted variation in high-throughput experiment. Specifically, the sva package contains functions for the identifying and building surrogate variables for high-dimensional data sets. Surrogate variables are covariates constr...Tags: RNA-seq, Genomics, R, Bioconductor
3438 days ago
Webinar on 'An integrated RNA and DNA approach to unravel genetic regulation in cancer'
Webinar on 'An integrated RNA and DNA approach to unravel genetic regulation in cancer' Abstract Whole exome DNA sequencing (WES) or whole genome DNA sequencing (WGS) allows detection of mutations and polymorphisms in all exonic and genomic regions, respectively, while messenger RNA sequencin...Tags: NGS, data analysis, genomics, transcriptomics, DNA-seq, RNA-seq
3334 days ago
Tags: Sequencing, DNA-Seq, RNA-Seq, MACE, Epigenetics, microRNA, Chip-Seq, RAD-Seq, Methylation-Seq, transcriptomics, GBS, Gene expression, de-novo assembly, breeding, Exome Seq, Rare variants
3599 days ago
Tags: Bioinformatics, Computational Biology, NGS, deepTools, Genome, RNA-Seq, Visualization, Tools
3429 days ago
Strand Life Sciences announces the release of Strand NGS v3.1 at ASHG 2017
Strand Life Sciences announces the release of Strand NGS v3.1 at ASHG 2017 ORLANDO, USA, Oct 17, 2017/ PRNewswire/ Strand NGS now supports large scale RNA- and small-RNA-Seq and Unique Molecular Identifiers (UMIs) for DNA-, RNA-, and small-RNA-Seq. Strand Life Sciences announced the latest ver...Tags: Strand NGS, Strand Life Sciences, ASHG, RNA-Seq, Unique Molecular Identifiers
2349 days ago
Tags: UMI, Strand NGS, Variant calling, RNA-Seq, small RNA-Seq
2334 days ago
GeneSpring webinar- Uncovering mechanisms of hepatotoxicity on 14 June at 8AM PST
Uncovering Mechanisms of Hepatotoxicity for High Affinity Antisense Oligonucleotides – 3’ end RNA-seq Profiling Using GeneSpring GX High affinity antisense oligonucleotides (ASOs) containing bicylic modifications (BNA) such as locked nucleic acid (LNA) or constrained ethyl (cEt) desi...Tags: genesoring, agilent, hepatotoxicity, rna-seq, strand life sciences
2502 days ago