Results for "Reads"

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  • KisSplice

    ...ogical conditions, and will quantify each variant in each condition. It has been tested on Illumina datasets of up to 1G reads. Its memory consumption is around 5Gb for 100M reads. KisSplice is not a full-len...

    2782 days ago

  • BRAKER: pipeline for fully automated prediction of protein coding genes with GeneMark-ES/ET and AUGUSTUS in novel eukaryotic genomes

    ...uently generates ab initio gene predictions. AUGUSTUS is a gene finder that usually requires supervised training and uses information from RNA-Seq reads in the prediction step. Compl...

    1913 days ago

  • Redundans

    ...moval of redundant contigs from an initial de novo assembly scaffolding: joining of genome fragments using paired-end and/or mate-pairs reads gap closing Redundans is:...

    2766 days ago

  • OPERA : Optimal Paired-End Read Assembler

    ...ses information from paired-end/mate-pair/long reads to order and orient the inter...tion provided by the paired-end/mate-pair/long reads (for further details see Gao...A-long-read that enables scaffolding with long-reads from third-generation sequenc...

    2758 days ago

  • FERMI

    ...cus on assembling Illumina short sequence reads from a mammal-sized genome. I...nitigs to represent all the information in raw reads.Fermi follows the overlap-lay...tool to fix misassemblies by using paired-end reads to achieve an accuracy c...

    2758 days ago

  • MIRO : miRNA omics

    ...s present implementation MIRO is especially adapted for the analysis of reads generated with the Illumina sequencing platform. MIRO allows to preprocess the Solexa-reads, map them flexibly to several...

    2732 days ago

  • BBMap help

    ...ams and depending on the file extension the input/output format is automatically chosen/set. Using BBMap Mapping Nanopore reads BBMap.sh has a length cap of 6kbp. Reads longer than this will be brok...

    2727 days ago

  • PHYMMBL

    ...n analyzing a metagenome is phylogenetic classification of raw sequence reads into groups representing the...(IMMs) to taxonomically classify DNA sequences, can accurately classify reads as short as 100 bp. Its accur...

    2726 days ago

  • Ribbon !!

    ...nstead, structural variations captured by long reads or assembled contigs often ne...ay Ribbon shows patterns in alignments of many reads across multiple chromosomes,...and BAM files with long, short, or paired-end reads, Ribbon can also load coordin...

    2716 days ago

  • GenomeScope: open-source web tool to rapidly estimate the overall characteristics of a genome, including genome size, heterozygosity rate, and repeat content from unprocessed short reads

    ...to rapidly estimate the overall characteristics of a genome, including genome size, heterozygosity rate, and repeat content from unprocessed short reads. These features are essential...

    2308 days ago