Results for "Reads"
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...rate synthetic next-generation sequencing reads. ART simulates sequencing reads by mimicking real sequencing...ed sequencing data. ART can also simulate reads using user own read error mod...efficient in read simulation. ART outputs reads in the FASTQ format, and alig...2724 days ago
- ...sequences from high-throughput DNA sequencing reads. Targeted bait capture is a...ipeline starts with high-throughput sequencing reads (for example from Illumina Mi...for each sample (single or paired-end sequence reads). When HybPiper generates seq...
2723 days ago
- ...S is a genomics application for scaffolding genome assemblies with long reads, such as those produced by Ox...d high-quality draft genome assemblies with any long sequences (eg. ONT reads, PacBio reads, another draft...
2723 days ago
Maq: Mapping and Assembly with Quality
...ping and Assembly with Quality It builds assembly by mapping short reads to reference sequences. Maq i...the same directory. Simulate diploid reference and read sequences, map reads, call variants and evaluate t...2705 days ago
- ...technologies are now producing multiple times the genome size in total reads from a single experiment. Thi...reference genome (e.g., mutants of the same species) directly from the reads used in the experiment. Our a...
2702 days ago
- HGA tool version 1.0 This tool helps to apply the Hierarchical Genome Assembly (HGA) method. The tool will apply: 1. Partitioning a given reads dataset into a given number of partiti...
2698 days ago
- ...identification of all genomic CNVs, both overlapping and non-overlapping targeted exons by integrating the analysis of In-targets and Off- targets reads. Specifically, it improves th...
2697 days ago
- ...). If WGS are chosen, then bipype finds the SA coordinates of the input reads and generates alignments in the SAM format given single-end reads, aligns reads to reference se...
2696 days ago
- ...a 2.0.7 Linux 64-bits binaries (Source code) (Legacy codebase) For the impatient A typical Minia command line looks like: ./minia -in reads.fa -kmer-size 31 -abundance-m...
2689 days ago
- ...ept of string graphs. The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence reads. More at https://github.com...
2689 days ago
