Genome Assembly Tools and Software - PART1 !!
...lts by only considering those reads which should assemble togethe...sing Reference and Paired-end Reads misFinder is a tool that a...ta sets containing only short reads from Illumina sequencing or a...which are called from the NGS reads, and aligns the assembled con...2675 days ago
Quick next generation sequencing (NGS) terms definition
...WGS protocol generates paired-end reads from both ends of longer frag...max]. Most (>90%) of paired-end reads are sampled from no-SV region...WGS data set separately.concordant reads: a read pair is called c...ignature produced by these type of reads is known as read-pair signatu...2512 days ago
2478 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...profiles of the RNA-seq paired-end reads Software (Java) https://git...nts directly from raw NGS sequence reads by counting unique k-mer...om third-generation long and noisy reads (10 kbp) using a dimensionali...omic classification of metagenomic reads to known bacterial genomes us...2361 days ago
2340 days ago
Tools for bacterial whole genome annotation
...T compiled four tools: (i) ABACAS which classifies and orientates contigs and estimates the sizes of gaps between them; (ii) IMAGE uses paired-end reads to extend contigs and close g...2321 days ago
Run miniasm assembler on nanopore reads !
...asm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read sel...bsp;sequences. Thus the per-base error rate is similar to the raw input reads. Find the detail of the read...2320 days ago
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
...ns an exact repeat somewhere, reads mapping to it will be mapped...you want to determine whether reads are mouse or human, it does n..., either quantifying how many reads go to each reference, or spli...file for each of them. Paired reads will always be kept together....2304 days ago
2295 days ago
List of visualization tools for genome alignments
...ch.uic.edu/DNannotator.htm JVM Java Visual Mapping tool for NGS reads http://www.springer.com/cda/...MapView Alignments of huge-scale single-end and pair-end short reads http://omictools.com/mapview...2273 days ago