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Results for "Reads"

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• • Poonam Mahapatra@poonam

  

  #Extract all #Reads from #BAM file for a #region Chr10:18000-45500 using #samtools: samtools view input.bam "Chr10:18000-45500" > output.bam

  Tags: Extract, Reads, BAM, region, samtools

  2862 days ago

• • Poonam Mahapatra@poonam

  

  #Extract #Chromosome #Number And Start Position #Reads: samtools view bamfile.bam|awk '{print $3 "\t" $4 "\t" $4+length($10)-1}' > newfile.tab

  Tags: Extract, Chromosome, Number, Reads

  2856 days ago

• • Jit@jit.aber

  

  Reads QC http://evomicsorg.wpengine.netdna-cdn.com/wp-content/uploads/2015/01/introQC.pdf #Quality #Reads #NGS

  Tags: Quality, Reads, NGS

  2816 days ago

• • Hardeep Kaur@hardeep

  

  Genome and coverage https://rtsf.natsci.msu.edu/_rtsf/assets/File/depth%20and%20coverage.pdf #Coverage #Genome #Depth #Reads #NGS

  Tags: Coverage, Genome, Depth, Reads, NGS

  2712 days ago

• • Jit@jit.aber

  

  Pacbio pipeline http://www.cbcb.umd.edu/software/PBcR/ #Pacbio #Reads #Pipeline

  Tags: Pacbio, Reads, Pipeline

  2597 days ago

• • Jit@jit.aber

  

  Find a pattern in first 7 characters of reads. bioawk -c fastx 'substr($seq,0,7) == $TAG { print }' reads.fq.gz #Reads #NGS #Extract #Pattern

  Tags: Reads, NGS, Extract, Pattern

  2491 days ago

• • Jit@jit.aber

  

  Harness PacBio reads with assemblers https://github.com/PacificBiosciences/Bioinformatics-Training/wiki/Large-Genome-Assembly-with-PacBio-Long-Reads #Reads #Assemblers #PacBio

  Tags: Reads, Assemblers, PacBio

  2260 days ago

• • Jit@jit.aber

  

  Long read extraction https://github.com/rrwick/Unicycler/wiki/Read-extraction #Reads #Extractions #Long #PacBio #Ont

  Tags: Reads, Extractions, Long, PacBio, Ont

  2096 days ago

• • Jit@jit.aber

  

  Scrubbing long reads https://dazzlerblog.wordpress.com/2017/04/22/1344/ #Scrub #Long #Reads #Pacbio

  Tags: Scrub, Long, Reads, Pacbio

  2095 days ago

• • BioStar@biostar

  

  Understanding Paired End and Mate pair reads http://www.biorigami.com/wp-content/uploads/2012/02/PAIREDEND-MATEPAIR.pdf #Reads #Mate #Pairs #PE #Reads #MatePair

  Tags: Reads, Mate, Pairs, PE, Reads, MatePair

  2043 days ago

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