Results for "Rearrangement"

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  • svelter

    This software is designed to identify both simple and complex rearrangements from paired-end sequencing data. Users could ran it easily by just alling SVelter.py with proper parameters. It's also possible to ran it on multiple cores by calling different sub-functions separately. More a...

    Tags: Bioinformatics, Computational Biology, Svelter, Rearrangement

    657 days ago

  • destruct

    Destruct is a tool for joint prediction of rearrangement breakpoints from single or multiple tumour samples. More at https://bitbucket.org/dranew/destruct

    Tags: Bioinformatics, Computational Biology, destruct, Rearrangement, Breakpoint

    657 days ago

  • COSMIC

    The accurate description and annotation of structural variants can be complex.  This is due to the different resolution that variants are reported from traditional cytogenetic coordinates down to the actual base pair positions. Furthermore, multiple rearrangements in a single area ...

    Tags: Bioinformatics, COSMIC, Chromosome, Cancer, Rearrangement, Breakpoints

    442 days ago

  • Ribbon !!

    Visualization has played an extremely important role in the current genomic revolution to inspect and understand variants, expression patterns, evolutionary changes, and a number of other relationships. However, most of the information in read-to-reference or genome-genome alignments is lost for ...

    Tags: Bioinformatics, Analysis, NGS, Visualization, Genome, Rearrangement, Ribbon

    422 days ago

  • Mauve

    Mauve is a system for constructing multiple genome alignments in the presence of large-scale evolutionary events such as rearrangement and inversion. Multiple genome alignments provide a basis for research into comparative genomics and the study of genome-wide evolutionary dynamics. Mauve has be...

    Tags: Bioinformatics, Rearrangement, Mauve, Tool, Alignment

    358 days ago

  • SLIDESORT-BPR

    Chromosomal rearrangement events are caused by abnormal breaking and rejoining of DNA molecules. They are responsible for many of the cancer related diseases. Detecting the DNA breaking and repairing mechanism, therefore, may offer vital clues about the pathologic causes and diagnostic/therapeuti...

    Tags: Chromosomal, rearrangement, events, abnormal, breaking, DNA, SLIDESORT-BPR

    27 days ago

  • SVfinder: Tool for detecting genomic rearrangement form DNA-seq data

    SVfinder provides genome-wide detection of structural variants from next generation paired-end sequencing reads.

    Tags: SVfinder, Tool, detecting, genomic, rearrangement, DNA-seq

    3 days ago