Results for "Reference"
Blogs
Tools to detect synteny blocks regions among multiple genomes
...structural features of study species by comparing to a well annotated reference sequence, thus enabling genom...ure.com/scitable/topicpage/synteny-inferring-ancestral-genomes-44022 Reference: http://www.nature.com/scita...2594 days ago
Dynamic chromosome breakpoints !!!
...c.za/~darren/rdp.html RB-finder http://www.ncbi.nlm.nih.gov/pubmed/18707535 LDhat2.0 http://ldhat.sourceforge.net/LDhat2.0/instructions.shtml Reference: http://www.nature.com/scita...3536 days ago
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Bookmarks
Nucl2Vec: Local alignment of DNA sequences using Distributed Vector Representation
We demonstrate a novel approach forlocal alignment of DNA reads with respect to reference genome.For this process we have used Skip-gram model for creatingencoding(Nucl2Vec) and k-near...1130 days ago
Rdatamining.com : R and Data Mining
...esources on data mining with R. Documents on using R for data mining are available to download for non-commercial personal use, including R Reference card for Data Mining, R and D...3899 days ago
- +173 more Bookmarks
Files
Regular Expression Cheat Sheet
...nd any good and user friendly regular expression cheat sheet, hence write our own cheat sheet. The Regular Expressions Cheat Sheet, a quick reference guide for regular expressions...3936 days ago
- In an attempt to find a good Linux reference for bioinformatician and BOL readers, I was unsuccessful at finding a decent one on the Internet. So, we decided to make a cheat sheet for biological programmers.
3936 days ago
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Discussion topics
- Like in case of plant genomes where nature of genome is too complex and huge in size to accomplish complete de novo assembly by current sequencing technology. What would be alternate solution? Can we live in reference free world?
3928 days ago
Pages
Bio++ : C Language libraries for your biological need
...o/Tutorial on Bio++http://162.38.181.25/BioPP/articles/tutorial/index.htmlDownload Linkshttp://162.38.181.25/BioPP/articles/download/index.html Reference: http://162.38.181.25/BioPP/i...3931 days ago
- ...uage, so the original implementation is considered to be the de facto reference. As of 2010, there are a numb...ment), and will eventually supersede the slower Ruby MRI. Ruby Quick Referencehttp://www.zenspider.com/Langu...
3931 days ago
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Top-level pages
- ...s as there are bioinformaticians (bioinformaticists?). The following references are a snapshot of the moving...squo;s individual genetic profile and compare it with a collection of reference profiles and other related in...
3931 days ago
Hidden Markov Models, Viterbi Algorithm, Markov Chain Exploration with script
...on and understand it with graphical version please visit http://www.planet-source-code.com/vb/scripts/ShowCode.asp?txtCodeId=75049&lngWId=1 Reference: 1.http://www.planet-source-...3808 days ago
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Wire posts
News
- The ongoing genomic research in USA contributed $31 billion to the U.S. gross national product and helped support 152,000 jobs. Reference: http://www.unitedformedicalresearch.com/wp-content/uploads/2013/06/The-Impact-of-Genomics-on-the-US-Economy.pdf
3936 days ago
Vaccination can be dangerous sometimes !!!
...his study suggests a role for fusion-enhancing anti-HA2 antibodies in VAERD, in the absence of receptor-blocking virus-neutralizing antibodies. Reference: http://www.nature.com/news/...3878 days ago
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Opportunity posts
2013 NextGen Genomics & Bioinformatics Technologies (NGBT) Conference, New Delhi, INDIA
...ed to host the Next-Generation Sequencing and Bioinformatics for Genomics & Healthcare conference. In the ten years since the first human reference genome was completed for US$3...3906 days ago
- PhD position in biochemistry towards bioinformatics at the Department of Biochemistry and Biophysics. Reference number: SU FV-2293-13. Deadline for application: September 10, 2013....
3881 days ago
- +30 more Opportunity posts
ResearchLabs posts
- PIT Bioinformatics Group solves problems in bioinformatics and computational biology. Recent developed online tools: - Budapest Reference Connectome: View a parametrizable connecto...
3229 days ago
- ...read analysis, which detects SVs by evaluating gapped sequence alignments; and (iv) sequence assembly, which enables the discovery of novel (non-reference) sequence insertions. http...
2976 days ago
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Bio-Scripts
Download the genome from NCBI using bash script/command
...mkdir "G$filename" cd "G$filename" # take action on each file. $f store current file name wget --input $f #cat $f cd .. done #Reference #ftp://ftp.ncbi.nlm.nih.gov/...2515 days ago
Genetic Algorithms demonstration with word DNA in Perl
...my $pop_ref = []; # a reference to a population array...$index = sample(\@weights); # we pass a reference to the weights array here...PAN Sample module) sub sample { # get the reference to the weights array my $we...2355 days ago
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Groups
...ion development for bioinformatics. This group is dedicated to discuss the features, uses, and application of BioJava in biological researchs. Reference @Â http://www.ncbi.nlm.nih.gov...3887 days ago
Tags
Bioinformatician’s Pocket Reference !!
It is amusing how brain of bioinformaticians work! Learning a new programming language for days feels so much of fun that making 5 minute discussion with neighbours (unless under special circumstances!) in our own mother-tongue. Today every bioinformatician keeps more than few languages and core ...Tags: Bioinformatics, Computational Biology, Pocket, Reference
3602 days ago
RACA: Reference-Assisted Chromosome Assembly
Rreference-Assisted Chromosome Assembly (RACA), an algorithm to reliably order and orient sequence scaffolds generated by NGS and assemblers into longer chromosomal fragments using comparative genome information and paired-end reads. http://www.ncbi.nlm.nih.gov/pubmed/23307812 http://bioen-comp...Tags: Bioinformatics, NGS, Assembly, Reference, RACA, Reads
2934 days ago
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Comments
Comment on "Benchmarking Perl Module !"
...these function from the Benchmark module to run the benchmark. The timethese function takes two arguments: the number of iterations to run and a reference to the benchmark subroutine....399 days ago
Comment on "Short-read assembly using Spades !"
...This can be done using tools such as QUAST or BUSCO. These tools assess the completeness and accuracy of the assembled genome by comparing it to reference genomes or sets of conserved...399 days ago
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