Results for "Regions"
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Public Databases for Bioinformatics !
...ct.org/files/ENCFF546PJU/@@download/ENCFF546PJU.bam, https://www.encodeproject.org/files/ENCFF059BEU/@@download/ENCFF059BEU.bam. Blacklisted regions were obtained from http:...1129 days ago
- ShRec3D is a program that aims at reconstructing a genome 3D structure (b) from the sole knowledge of the contacts between different genomic regions (a) as determined by Hi-C (http://...
3408 days ago
- LAST can: Handle big sequence data, e.g: Compare two vertebrate genomes Align billions of DNA reads to a genome Indicate the reliability of each aligned c...
2968 days ago
YASS :: genomic similarity search tool
...ise local alignment tools for DNA sequences (FASTA, BLAST, PATTERNHUNTER, BLASTZ/LASTZ, LAST ...), YASS uses seeds to detect potential similarity regions, and then tries to extend the...2915 days ago
- ...s can interact with each other via chromatin folding and affect gene expression levels. Genomic technologies for mapping interactions between DNA regions, e.g., ChIA-PET and HiC, can...
2859 days ago
- ...and individiual focused studies. All interaction data are freely available in a standardized file format. Records can be queried by genomic regions, gene names, organism, and de...
2852 days ago
- ...ry consumption is around 5Gb for 100M reads. KisSplice is not a full-length transcriptome assembler. This means that it will output the variable regions of the transcripts, not recon...
2809 days ago
Comparative genomics educational material and papers bookmarks
...ation) identified homologous synteny blocks (HSBs). Using porcine HSBs and stringent filtering criteria, 192 pig-specific evolutionary breakpoint regions (EBRs) were located. The numb...2723 days ago
Method in Comparative genomics !!
...identification of orthologs for more than 90% of genes and intergenic regions across the four species despi...s in the gene correspondence revealed recent gene family expansions in regions of rapid genomic change. We...2723 days ago
- ACT is a Java application for displaying pairwise comparisons between two or more DNA sequences. It can be used to identify and analyse regions of similarity and difference between ge...
2787 days ago
