Results for "Regular Expression"
Blogs
Five unique traits of effective computational biologist
...and have an open mind to sources of knowledge that others may shut out. In other concrete term, the bad biological programmer learn Perl's regular expression when they started a project o...3940 days ago
List of gene ontology software and tools
The Gene Ontology (GO) is a set of associations from biological phrases to specific g...ology (GO) terms in a list of microarray probe sets or gene identifiers (with expression information for PAGE analysis...3700 days ago
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Bookmarks
Well designed regular expression cheat sheet
In our computational biology work, we mostly play with DNA or AA string. For string based programming work this regular expression cheat sheet is really helpful. Keep it handy.3940 days ago
List of popular bioinformatics software/tools
In current genome era, our day to day work is to handle the huge geneome sequences, expression data, several other datasets. This link provide a comprehensive list of commonly used sofware/tools.3935 days ago
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Files
Regular Expression Cheat Sheet
The Regular Expression are the sole of Perl language, and for bioinformatician it.... We did not find any good and user friendly regular expression cheat sheet, hence write our own cheat sheet. The Regular Expressions Cheat Sheet, a quick referen...3942 days ago
- Liver cancer is third leading cause of deaths and fourth...iRNA is small RNA molecules known to inhibit mRNA expression of particular gene by binding...this region become hyper-methylated thats prevent expression of host gene. Thus , integrat...
3551 days ago
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Discussion topics
- Like in case of plant genomes where nature of genome is too complex and huge in size to accomplish complete de novo assembly by current sequencing technology. What would be alternate solution? Can we live in reference free world?
3934 days ago
Pages
- I found several useful bioinformatics articles which exap...bsp; Knowledge-based Analysis of Microarray Gene Expression Data Using Support Vector Mac...03. Computational Analysis of Complexity in Gene Expression Arrays Building your own Bio...
3911 days ago
Genome Assembly Tools and Software - PART2 !!
The genome assemblers generally take a file...mble transcripts and estimate their expression levels from RNA-Seq reads. C...Transcriptome Assembly and Isoform Expression Level Estimation from Biased...genome, across a broad spectrum of expression values and in presence of alt...2675 days ago
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Top-level pages
- "Bioinformatics is a science of biological...l and spatial organisation of their expression in the cell encoded by the DN...nctional genomics experiments (e.g. expression data, yeast two–hybrid...but also sequences regulating gene expression. A comparison of the genomes...
3937 days ago
- ...n what are you doing, how does it fit in to the wider picture? Try to regularly review, and keep track of w...0.1.1.106.385&rep=rep1&type=pdf Towards knowledge-based gene expression data mining: http://www....
3936 days ago
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Wire posts
News
R package for visualising GO enrichment
An R package that visualizes the GO enrichment results as word clouds and arranges th...allows us to draw informative summary plots for analyses such as differential expression or clustering, where for each...3930 days ago
Chromatin: From nucleosomes to chromosomes, 30 April - 2 May 2014
EMBL-EBI announced the Wellcome Trust Scientific Conference Chromatin: From nucleosom...lopments in understanding chromatin structure and function, particularly gene expression and genome integrity.This mee...3915 days ago
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Opportunity posts
Structural polymorphism analysis from NGS data
The LabEx BASC (Biodiversity, Agroecosystems, Society, Climate), a network of 13 labo...tablish a link between sequence variation, functional variation, gene/protein expression and phenotypic adaptation....3938 days ago
Postdoctoral position in bioinformatics @ Sweden
Information about the department The Department of Mathematical Sciences at Chalmers...xt generation DNA sequencing, in particular comparative metagenomics and gene expression analysis (RNA-seq). We have s...3938 days ago
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ResearchLabs posts
The Institute for Molecular Bioscience (IMB), Bailey Lab
Pattern recognition and computational biology MEME Suite software development; gene expression; mathematical modelling; gene regulation and transcription Specialization: Pattern recognition and modelling in computational biology Link @ http://www.imb.uq.edu.au/tim-bailey3938 days ago
- Statistical functional genomics in experimental medicine The genome projects and the...ckgrounds. Research Area: Linear models for microarray data Digital gene expression technologies Detection of mo...
3938 days ago
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Video
How Genes are Regulated: Transcription Factors
Each cell in our body inherits the same master copy of DNA, but different cell types...better understand and model their binding to DNA and their regulation of gene expression. Scientific Direction by the...3884 days ago
DNA is packaged in a chromosome experiment
For more information, log on to- http://shomusbiology.weebly.com/ Download the study...and creates an added layer of regulatory control, which ensures correct gene expression. Nucleosomes are thought to c...3866 days ago
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Bio-Scripts
Read lines from input file – print lines that match a regular expression
#!/usr/bin/perl use strict; use warnings; my $line; #read the line-by-line for each line ask if it matches the regex print it if it matches while($line = ){...2907 days ago
Parse a genbank file using regular expressions
#! /usr/local/bin/perl -w $genbank = "genbank_file.txt"; open (GENBANK, $genbank) || die "cannot open $gb_report for reading: $!"; # Flag for multiline translati...2907 days ago
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Polls
Which of the following programming language is best for a bioinformatics beginner?
I will be doing NGS in the course of my research work and I will like to learn a prog...oftware. I basically want to do de-novo assembly, map reads, align reads, and expression analysis. Recommendations wel...3520 days ago
Groups
This group is being designed to cover some of the common algorithms underlying the fo...rotein sequences, predicting genes, finding regulatory motifs, analyzing gene expression, constructing evolutionary tr...3892 days ago
Tags
Detect the sequence pattern and its location in fasta file with match and mismatches information.
This script is one of my old script to detect some centromeric pattern in chromosomes. User can also control the number of mismatches allowed through command line .. To run: perl centro.plTags: Centromere, AI, Perl, Pattern, Regular Expression, Extract Region
3858 days ago
Comments
Comment on "Regular Expression Cheat Sheet"
You can also use this regular expression tutorial @ http://sunsite.ualberta.ca/Documentation/Misc/perl-5.6.1/pod/perlretut.html3939 days ago
