Trimmomatic: A flexible read trimming tool for Illumina NGS data
...LUMINACLIP:TruSeq3-PE.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 This will perform the following: Remove adapters (ILLUMINACLIP:TruSeq3-PE.fa:2:30:10) Remove leading low quality or N base...2905 days ago
2857 days ago
2779 days ago
BASE: a practical de novo assembler for large genomes using long NGS reads
...gh probability to appear uniquely in the genome. Such seeds form the basis for BASE to build extension trees and then to use reverse validation to remove the branches based on read co...1988 days ago
1502 days ago
FiNGS: Filters for Next Generation Sequencing
Key features Filters SNVs from any variant caller to remove false positives Calculates metrics based on BAM files and provides filtering not possible with other tools Fully user-...1126 days ago