Results for "Repeats"

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  • Compressive Genomics

    The key to finding a solution is to notice that most genomicsequences differ by very little. It may well be that the number of complete genome sequences being stored is increasing rapidly, but the actual amount of new data is very small. In other words, a single DNA sequence isn't particular...

    Tags: data compression, genomics, sequencing, redundancy, repeats, bam, sff, gz, zip

    1327 days ago

  • Tools for Searching Repeats And Palindromic Sequences

    In genetics, the term palindrome refers to a sequence of nucleotides along a DNA (deoxyribonucleic acid) or RNA (ribonucleic acid) strand that contains the same series of nitrogenous bases regardless from which direction the strand is analyzed. Akin to a language palindrome—wherein a word o...

    Tags: Bioinformatics, Search, Repeats, Palindromic, Sequences, Tools, Software

    313 days ago

  • RepeatModeler

    RepeatModeler is a de-novo repeat family identification and modeling package. At the heart of RepeatModeler are two de-novo repeat finding programs ( RECON and RepeatScout ) which employ complementary computational methods for identifying repeat element boundaries and family relationships from se...

    Tags: Bioinformatics, Analysis, NGS, Repeats, TE, RepeatModeler, RECON, de-novo, family, Genome

    224 days ago

  • TEannot

    We advise to run first the TEdenovo pipeline but it is not compulsory. We suppose you begin by running the TEannot pipeline on the example provided in the directory "db/" rather than directly on your own genomic sequences. Thus, from now on, the project name is "DmelChr4".  

    Tags: Bioinformatics, Analysis, NGS, TEs, TEannot, REPET, Pipeline, Repeats, Genome

    224 days ago

  • Assembly and repeats https://www.coursera.org/learn/dna-sequencing/lecture/fKX4C/lecture-third-law-of-assembly-repeats-are-bad #Assembly #Repeats #Bad

    Tags: Assembly, Repeats, Bad

    108 days ago