Tags: data compression, genomics, sequencing, redundancy, repeats, bam, sff, gz, zip
3909 days ago
Tags: adaptation, genome, fly, repeats, transposable, elements
979 days ago
Common methods to discover tandem repeats
Tandem repeats are DNA sequences that are repeated in a contiguous manner in the genome. These sequences are often used as genetic markers and are important in many areas of genetics and genomics research. Here are some methods for discovering tandem repeats in genomes: T...Tags: Tandem, repeats, DNA, sequences, find, methods
412 days ago
Tools for Searching Repeats And Palindromic Sequences
What are genomic interspersed repeats? In the mid 1960's scientists discovered that many genomes contain stretches of highly repetitive DNA sequences ( see Reassociation Kinetics Experiments, and C-Value Paradox ). These sequences were later characterized and placed into five categories: Simple...Tags: Bioinformatics, Search, Repeats, Palindromic, Sequences, Tools, Software
2200 days ago
Tags: Bioinformatics, Analysis, NGS, Repeats, TE, RepeatModeler, RECON, de-novo, family, Genome
2806 days ago
Tags: Bioinformatics, Analysis, NGS, TEs, TEannot, REPET, Pipeline, Repeats, Genome
2806 days ago
HipSTR: Haplotype inference and phasing for Short Tandem Repeats
HipSTR was specifically developed to deal with these errors in the hopes of obtaining more robust STR genotypes. In particular, it accomplishes this by: Learning locus-specific PCR stutter models using an EM algorithm Mining candidate STR alleles from population-scale sequencing dat...Tags: HipSTR, Haplotype, inference, phasing, Short, Tandem, Repeats
1874 days ago