2127 days ago
Install BLAST in Ubuntu/Linux and Window !
.... #If that FTP links does not work, try HTTP instead http://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.7.1/ncbi-blast-2.7.1+-win64.exe #Run this installer using the de...1130 days ago
2899 days ago
Install ATOM editor on Elemantory OS / Ubuntu
...ll, link, linked, links, list, ln, lns, login, ls, open, outdated, prune, publish, rebuild, rebu...st, uninstall, unlink, unpublish, unstar, update, upgrade, view. Run `apm help ` to see the more d...1159 days ago
2676 days ago
Transpose the file coordinates and plot dendrogram in R
#Save this as tr.awk { for (i=1; i2600 days ago
Genetic Algorithms demonstration with word DNA in Perl
...minimum fitness for survival my $generation_count = 100000; # run for this many generations my...ion to the individuals } while ($generation++ < $generation_count); # run until we are out of generatio...2355 days ago
Plot the clock using Lastz -gerenal outfile
...h @allFreq, $score; } my $allKeys=join ',', @allKeys; my $allFreq=join ',', @allFreq; my $hLen=scalar (@allKeys); my $ll="$hLen".'L'; $R->run(qq` d stopR() ;2282 days ago
Perl script to convert fastq to fasta file
...die $usage; my $factory = Bio::Factory::EMBOSS->new; my $seqret = $factory->program('seqret'); # $seqret is a Bio::Tools::Run::EMBOSSApplication object $seqret->run({-sequence => $infile,...2234 days ago
Estimate Genome Size with Jellyfish and R
...mation/sample_read_1.fastq /common/Tutorial/Genome_estimation/sample_read_2.fastq #-t -treads=unit32 Number of treads to be used in the run. eg: 1,2,3,..etc. #-C -bo...2229 days ago