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Phylogenomics/Phylogenetic website
...d new developments in phylogenetics. Although we do have a Troubleshooting category for getting feedback on analyses, this is not a help site for running phylogenetics programs. A gr...3672 days ago
- ...calls, using Google's cloud infrastructure. Store alignments and variant calls for one genome or a million. Process genomic data in batch by running principal component analysis...
3479 days ago
UCSC Genome Browser and Blat software !
...ownload, type "uname -a" on the command line to display your machine type. In most cases the usage statement for the application can be viewed by running the binary with no arguments....2989 days ago
- ...ent that it scales even up to thousands of bacterial genomes. This readme covers all necessary instructions for the impatient to get andi up and running. For extensive instructions p...
2904 days ago
Bpipe - a tool for running and managing bioinformatics pipelines
Bpipe provides a platform for running big bioinformatics jobs that consist of a series of processing stages...pe, please cite: Sadedin S, Pope B & Oshlack A, Bpipe: A Tool for Running and Managing Bioinformatics P...2896 days ago
- ...nd Computational Biology special issue : Quality assessment and control of high-throughput sequencing data). It contains bash/perl/R scripts for running the analysis presented in the...
2873 days ago
- ...ipeline for assembling DNA sequence data generated on the Illumina sequencing platform. This README will take you through the steps necessary for running _A5-miseq_. Point to note:...
2807 days ago
- We advise to run first the TEdenovo pipeline but it is not compulsory. We suppose you begin by running the TEannot pipeline on the example provided in the directory "db/" rather than directly on your own genomic sequences. Thus, from now on, the project name is "DmelChr4".
2807 days ago
- ...it does so in a standardized directory hierarchy. Many of the post-processing scripts rely on this directory hierarchy, so do not modify it after running the initial pipeline. It is a...
2729 days ago
Maq: Mapping and Assembly with Quality
...ew the alignment: cd maqdemo/easyrun; maqindex -i -c consensus.cns all.map; maqview -c consensus.cns all.map Even for advanced maq users, running `maq.pl demo' is recommended....2711 days ago
