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Subprocess is one of simplest way of running linux command from within python code Example: if you want to run fastqc for QC of fastq file: from subprocess import Popen,PIPE,call...3539 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...n heterogeneity from high-throughput sequencing datasets; calls variants found in <.05% of the population Input: BAM file input→ suggest running through GATK Output: Ma...2898 days ago
- ...r currently active processes top — display all running processes k...kup host lsof -i tcp:1337 — list all processes running on port 1337 ...
2864 days ago
Genome Assembly Tools and Software - PART1 !!
...ore specific functionality to Clotho such as viewing and editing data, running simulations, and automating v...When thinking about Clotho Apps, an appropriate analogy would be Apps running on the Android operating syst...2675 days ago
Source Code and Pseudo Code !!
...total to zero Initialize counter to zero Input the first grade while the user has not as yet entered the sentinel add this grade into the running total add one to the gra...2649 days ago
- ...es remains a good option for hybrid assembly - SPAdes was used to produce the B fragilis assembly by Mick Watson’s group. Again, running spades.py will show you the o...
2341 days ago
Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
...; display your currently active processes top — display all running processes kill pid &mdas...; reverse lookup host lsof -i tcp:1337 — list all processes running on port 1337 Searching grep...2270 days ago
Installing Bio::SCF perl module
....yml and MYMETA.jsonjitendra@jitendra-UNLOCK-INSTALL[Bio-SCF-1.01] make []cp SCF.pm blib/lib/Bio/SCF.pmcp SCF/Arrays.pm blib/lib/Bio/SCF/Arrays.pmRunning Mkbootstrap for Bio::SCF ()ch...2208 days ago
Creating conda environment for python2.7
...g environment: done ==> WARNING: A newer version of conda exists. <== current version: 4.5.0 latest version: 4.5.2 Please update conda by running $ conda update -n base conda...2180 days ago
- ...rrect MACHTYPE for your system) MACHTYPE=x86_64 export MACHTYPE now running the command: echo $MACHTYPE...neatly placed in /usr/local/bin/x86_64, just like I wanted.now simply running the command: blat on the co...
2053 days ago
