Results for "Running"
Blogs
How to install Perl modules manually, using CPAN command, and other quick ways
.../home/download# cd /home/download# gzip -d XML-Parser-2.36.tar.gz# tar xvf XML-Parser-2.36.tar# cd XML-Parser-2.36Build the perl module: Build by running Makefile.PL, remember the cas...3934 days ago
Computational Proteomics : Lets remember the basics
...means that you absolutely nowhere in understanding the key concept and do research.2. Keep handy with complex mathematical formula, before merely running tools or software.3. Dig it b...3471 days ago
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Bookmarks
Phylogenomics/Phylogenetic website
...d new developments in phylogenetics. Although we do have a Troubleshooting category for getting feedback on analyses, this is not a help site for running phylogenetics programs. A gr...3665 days ago
- ...calls, using Google's cloud infrastructure. Store alignments and variant calls for one genome or a million. Process genomic data in batch by running principal component analysis...
3472 days ago
- +27 more Bookmarks
Files
Bioinformatician's summer vacation !!!
Yes, the bioinformatician do spend their summer vacation like this. They spend more time on cheking the JOBS running on various servers.3516 days ago
- DOWNLOAD LINK: https://github.com/BioInf-Wuerzburg/proovread/raw/master/util/blasr-1.3.1/blasr I'm running "OPERA-LG_v2.0.5/bin/preprocess_reads.pl" and have the following error: fa...
2135 days ago
Pages
Linux SSH Client Commands for Bioinformatics
...SSH Client Version:Checking for your SSH client is very sare, but sometimes it may be necessary to identify the SSH client that you are currently running and it’s corresponding...3689 days ago
Keep Your Important SSH Session Running when You Disconnect from Server !!!
...for your console. It will allow you to keep multiple terminal sessions running and easily switch between the...ou’ll be at a normal prompt.To disconnect (but leave the session running)Hit Ctrl + A and then Ctrl +...3687 days ago
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Top-level pages
- Subprocess is one of simplest way of running linux command from within python code Example: if you want to run fastqc for QC of fastq file: from subprocess import Popen,PIPE,call...
3533 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...n heterogeneity from high-throughput sequencing datasets; calls variants found in <.05% of the population Input: BAM file input→ suggest running through GATK Output: Ma...2892 days ago
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Wire posts
News
4273π: Bioinformatics education on low cost ARM hardware
Are you teaching bioinformatics at universities and found it complicated by typical computer classroom settings. As well as running software locally and online, students should gain e...3882 days ago
You and your friend have similar DNA !!!
...y similar to themselves - so much so that friends tend to be as alike at the genetic level as a person's fourth cousin. Scientists with a long-running Framingham Heart Study looked...3553 days ago
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Opportunity posts
- ...udies. Selection of participants will be based on their background, running research projects and on ex...application form, together with an abstract of at least one of their running projects, a "one-page CV" a...
3772 days ago
Post doc in Computational Genetics and Genomics at CEINGE Biotecnologie Avanzate, Naples, Italy
...he analysis of DNA-seq, RNA-seq, ChIP-seq data using available methods running in R and UNIX environment....will have some expertise in data analysis of NGS data by using methods running in R and UNIX environment. Fa...3720 days ago
- +5 more Opportunity posts
ResearchLabs posts
- ...We’re also investigating the processes that cause mutations and accelerate tumour evolution and working out how they might be stopped. And we are running evolutionary clinical trials...
1956 days ago
Video
Bioinformatics 101 - Running BLAST
How to format the database for BLAST, run the command, view the output file, and use BioPerl and Perl to parse the output. By David Francis, Ohio State University. Deli...3880 days ago
- Presented July 30, 2014 and covering: an NCBI BLAST AMI at Amazon Web Services; introduction to AWS and setting up an instance; running command line BLAST and using the BLAST URL API via the AMI; and answers to attendee questions.
3503 days ago
Bio-Scripts
- JitMeta (base) ➜ JitMeta conda create --name JitMetaENV Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1201 days ago
- (JitMetaENV) ➜ JitMeta conda install grabseqs -c louiejtaylor -c bioconda -c conda-forge Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1201 days ago
- +54 more Bio-Scripts
Tags
Keep Your Important SSH Session Running when You Disconnect from Server !!!
As a Bioinformatician/ Computational biologist we swim in the ocean of genomic/proteomics data, and play with them with an ease. In our day to day simulation, analysis, comparative study we do need to run exhaustive programs, which might take more than a week. In such cases we do need to disconne...Tags: Bioinformatics, Computational Biology, Linux, SSH, Session, Disconnect, Running, Screen, Example
3687 days ago
Monitor running jobs on Linux server
You as a bioinformatican run lots of program on your servers. Sometime the shared server is also used by your colleague. If server is busy you sometime need to check the running programs and want to monitor the running programs as well. The "top" command will come in handy when you need to find o...Tags: Bioinformatics, Computational Biology, Linux, Command, Top, Running, Processes, Server, Monitor
3604 days ago
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Comments
Comment on "Benchmarking Perl Module !"
...or subroutines. In summary, benchmarking a Perl module involves writing a benchmark program that exercises the functionality of the module, running the benchmark using the timet...399 days ago
Comment on "Short-read assembly using Spades !"
...es: Quality control of raw reads: Before running the assembly, it is important...ous tools such as Trimmomatic or FastQC. Running SPAdes: After quality control...TQ format. Evaluation of assembly: After running SPAdes, the next step is to e...399 days ago
- +12 more Comments
