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Comment on "Benchmarking Perl Module !"
...or subroutines. In summary, benchmarking a Perl module involves writing a benchmark program that exercises the functionality of the module, running the benchmark using the timet...400 days ago
Comment on "Short-read assembly using Spades !"
...es: Quality control of raw reads: Before running the assembly, it is important...ous tools such as Trimmomatic or FastQC. Running SPAdes: After quality control...TQ format. Evaluation of assembly: After running SPAdes, the next step is to e...400 days ago
Comment on "Short-read assembly using Spades !"
...<output_dir> with the name of the output directory where the assembled contigs will be saved. Check the output: Once SPAdes has finished running, check the output directory f...405 days ago
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
...command: brew install cpanminus Install BioPerl by entering the following command: cpanm BioPerl Verify the installation by running a BioPerl script or entering...407 days ago
Comment on "Perl Module Installation"
...command: brew install cpanminus Install BioPerl by entering the following command: cpanm BioPerl Verify the installation by running a BioPerl script or entering...407 days ago
Comment on "Basic docker commands !"
Attached the running docker Instead of using -i or -t options, use the attach command to connect to a running container: docker attach container_id957 days ago
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
Check the perl module Test if dependencies are met by running this perl one-liner: perl -e "use JSON::XS;"1219 days ago
Comment on "Sibelia: A comparative genomics tool"
...mpdir <dir name> "Sibelia" creates some temporary files while running. By default these files are...D1 K2 D2 ... KM KM Where M is the number of stages. So, running with the stage file: 4...1269 days ago
Comment on "REAPR: a universal tool for genome assembly evaluation"
...n the pipeline. Store the results in reapr_<assembler>. This should take about ten minutes. There are several checks you can do after running Reapr (detailed here) bu...1321 days ago
- kallisto can process either single-end or paired-end reads. The default running mode is paired-end and requires an even number of FASTQ files represented as pairs, e.g. kall...
1346 days ago
