Results for "SNP"
Bio-Scripts
jitendra@jitendra-UNLOCK-INSTALL[SNP] wget https://github.com/broadin...ing GATK jar /media/jitendra/OSDisk/SNP/gatk-4.0.2.1/gatk-package-4.0...level=1 -jar /media/jitendra/OSDisk/SNP/gatk-4.0.2.1/gatk-package-4.0...and genotyping for short variants (SNPs, SNVs and Indels) Combi...2065 days ago
- ...(scalar(@s) >= 3){$c++;}} print "$c\n";'` echo "num bp: "$NUM_BP NUM_SNP=`cat $1 |grep -v "#" | awk -F...$4); } else { SUM+=length($4)-length($5)}} END { print SUM}'` echo "num snp: "$NUM_SNP perl -e 'chomp(...
1594 days ago
Samtools commands for bioinformatician !
...e # -f : use reference genome given samtools mpileup -g -f sal_ref_sej.fasta sal_sej_sorted.bam.bam > sal_vars.bcf ### calling snp and indels # -c : find snp # -v : output only potential...1593 days ago
Create random 10000 SNPs in genome !
..../simuG.pl -refseq SGDref.R64-2-1.dups.fa -snp_count 10000 -prefix simuSNP [Sun Jan 10 16:05:57 2021]...ck specified options .. Running simuG for SNP/INDEL simulation >> Ignore a...n Jan 10 16:05:57 2021] Introducing random SNPs based on the following param...1201 days ago
Create random 1000 INDEL in genome !
(base) ➜ dupStudy git:(master) ✗ perl ../simuG.pl -refseq simuSNP.simseq.genome.fa -indel_count 1000 -pre...Sun Jan 10 16:14:00 2021] Check specified options .. Running simuG for SNP/INDEL simulation >> Ignore a...1201 days ago
