Results for "SPAdes"
Blogs
Bioinformatics tools developed for Oxford Nanopore data analysis !
...ac/ra-integrate/ ALLPATHS-LGde Bruijn graph ALLPATHS-L correctorhttps://www.broadinstitute.org/software/allpaths-lg/blog/?page_id=12 SPAdes de Bruijn graph SPAdes correctorhttp://bioinf.spbau....2305 days ago
List of tools frequently used while genome assembly
List of tools frequently used while genome assembly: I have used the following assemblers Spades (v. 3.10.1) CANU (v. 1.6) Unicycler (v. v0.4.1) Miniasm (v....1914 days ago
Protocol for De novo Genome Assembly using Illumina Reads
...ethod of assembling the reads trimmed by quality into draft contigs. spades.py -1 illumina_R1.fastq.gz -2 illumina_R2.fastq.gz --careful --cov-cutoff auto -o result_of_spades_assembly_all_illumina A si...1189 days ago
Illumina based assembly pipeline steps !
...tersect variants across callers (BCFTools) De novo assembly Primer trimming (Cutadapt; amplicon data only) Choice of multiple assembly tools (SPAdes || Unicycler || minia) Bla...862 days ago
