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  • SPAdes Genome Assembler! http://bioinf.spbau.ru/en/spades #Genome #Assembler #Omics #NGS

    3565 days ago

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  • SPADes team announce new version SPADes v3.15

    New SPAdes 3.15.0.0. announced by the SPADes team This release includes such new features as: - CoronaSPAdes pipeline for the assembly of...llocator mimalloc; - PlasmidSPAdes and bgcSPAdes are now provide...bsp;https://cab.spbu.ru/software/spades/

    1168 days ago

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  • SPAdes

    SPAdes – St. Petersburg genome assembler – is intended for both standard isolates and single-cell MDA bacteria assemblies. This manual will help you to install and run SPAdes. SPAdes version 3.7.1 was released under GPLv2 on March 8, 2016 and can be downloaded from http://bioinf.spbau...

    Tags: Bioinformatics, NGS, Assembly, Assembler, SPAdes, Reads, Illumina

    2900 days ago

  • SPAdes hybrid genome assembly

    When you have both Illumina and Nanopore data, then SPAdes remains a good option for hybrid assembly - SPAdes was used to produce the B fragilis assembly by Mick Watson’s group. Again, running spades.py will show you the options: spades.py This produces: SPAdes genome ...

    Tags: SPAdes, hybrid, genome, assembly, ONT, Nanopore

    2313 days ago

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  • Comment on "Short-read assembly using Spades !"

    ...number of short sequencing reads. SPAdes (St. Petersburg genome assemb...eps for short-read assembly using SPAdes: Quality control of raw...immomatic or FastQC. Running SPAdes: After quality control, the n...uation of assembly: After running SPAdes, the next step is to evaluate...

    378 days ago

  • Comment on "Short-read assembly using Spades !"

    SPAdes (St. Petersburg genome assemb...brief overview of how to use SPAdes for short-read assembly: Install SPAdes: SPAdes can be downloaded fro...files for each read. Run SPAdes: To run SPAdes, open the term...ditor or a genome browser. SPAdes also provides several options...

    383 days ago

  • +4 more Comments