Results for "SPAdes"
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Comment on "Short-read assembly using Spades !"
...number of short sequencing reads. SPAdes (St. Petersburg genome assemb...eps for short-read assembly using SPAdes: Quality control of raw...immomatic or FastQC. Running SPAdes: After quality control, the n...uation of assembly: After running SPAdes, the next step is to evaluate...405 days ago
Comment on "Short-read assembly using Spades !"
SPAdes (St. Petersburg genome assemb...brief overview of how to use SPAdes for short-read assembly: Install SPAdes: SPAdes can be downloaded fro...files for each read. Run SPAdes: To run SPAdes, open the term...ditor or a genome browser. SPAdes also provides several options...411 days ago
Comment on "Spades tutorial PDF"
Spades tutorial http://cab.spbu.ru/files/release3.11.1/manual.html#yaml798 days ago
Comment on "poRe: an R package for the visualization and analysis of nanopore sequencing data"
...github, so let’s go get those: git clone https://github.com/mw55309/poRe_scripts.git We will assemble using SPAdes, so let’s go get that: wget http://spades.bioinf.spbau.ru/release3.6.2/...2164 days ago
Comment on "SPAdes hybrid genome assembly"
use SPAdes to assemble the data. SPAdes is a swiss-army knife of genome assembly to...ll also only use 3 kmers to save time: ./SPAdes-3.6.2-Linux/bin/spades.py --o...--nanopore minion.pass.2D.fastq -o SPAdes_hybrid & Use samtools...2164 days ago
- ...last assembler we will run is SPAdes. SPAdes is different from the...is automatically selected by SPAdes using the maximum read length...n SPAdes we will use the spades.py command with the ...de automatic kmer selection. spades.py --careful -o SPAdes_out -1...
2334 days ago
