Results for "SSPACE"

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  • Download blasr 1.3 version

    ...-F 0x4 - | /usr/local/bin/samtools sort -@ 20 -no - temporarySam > FALCON-Unzip-Scaff.bamMapping long-reads using blasr.../home/urbe/Tools/SSpace/SSPACE-LongRead_v1-1/blasr -nproc 40...

    2114 days ago

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  • Some useful Bioinformatics links

    ...zoho.eu%2Fportal%2Favaga2 lh3/minimap2: A versatile pairwise aligner for genomic and spliced nucleotide sequences https://github.com/lh3/minimap2 SSPACE-LongRead: scaffolding bacteri...

    2204 days ago

  • Gap filling or Contigs extensions tools !

    ...://derisilab.ucsf.edu/index.php?page=software You could also look at SSPACE (http://www.baseclear.com/landingpages/basetools-a-wide-range-of-bioinformatics-solutions/sspacev12/), ATLAS tools (http://www...

    2128 days ago

Wire posts

  • #SSPACE Basic, SSAKE-based #Scaffolding of Pre-Assembled Contigs after Extension https://github.com/nsoranzo/sspace_basic

    2004 days ago

Bio-Scripts

  • Run sspace !

    #!/bin/bash cd `pwd` perl ~/apps/SSPACE-1.2_linux-x86_64/SSPACE_v1-2.pl \ -l libraries.txt \ -s Contigs_over200_nocp.fasta \ -k 5 \ -a 0.7 \ -x 1 \ -m 30 \ -o 20 \ -b Rayk31_scaffolds_extension

    1685 days ago

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  • SSPACE

    SSPACE standard is a stand-alone program for scaffolding pre-assembled contigs using NGS paired-read data. It is unique in offering the possibility to manually control the scaffolding process. By using the distance information of paired-end and/or matepair data, SSPACE is able to assess the order...

    Tags: Bioinformatics, SSPACE, Scaffolding, NGS, Genome, Contig

    2520 days ago

  • #SSPACE Basic, SSAKE-based #Scaffolding of Pre-Assembled Contigs after Extension https://github.com/nsoranzo/sspace_basic

    Tags: SSPACE, Scaffolding

    2004 days ago

  • +1 more Tags