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Results for "SSPACE"

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• • Jit@jit.aber

  

  SSPACE

  SSPACE standard is a stand-alone program for scaffolding pre-assembled contigs using NGS paired-read data. It is unique in offering the possibility to manually control the scaffolding process. By using the distance information of paired-end and/or matepair data, SSPACE is able to assess the order...

  Tags: Bioinformatics, SSPACE, Scaffolding, NGS, Genome, Contig

  2541 days ago

• • Abhimanyu Singh@abhimanyu

  

  #SSPACE Basic, SSAKE-based #Scaffolding of Pre-Assembled Contigs after Extension https://github.com/nsoranzo/sspace_basic

  Tags: SSPACE, Scaffolding

  2025 days ago

• • Rahul Nayak@rahul

  

  gapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output

  gapFinisher is based on the controlled use of a previously published gap filling tool FGAP and works on all standard Linux/UNIX command lines. They compare the performance of gapFinisher against two other published gap filling tools PBJelly and GMcloser. gapFinisher can fill gaps in draft genom...

  Tags: gapFinisher, reliable, gap, filling, pipeline, SSPACE, LongRead, scaffolder, NGS, Tools

  1547 days ago