RNAcon: web-server for the prediction and classification of non-coding RNAs
RNAcon is a web-server for the prediction and classification of non-coding RNAs. It uses SVM-based model for the discrimination between coding and ncRNAs and RandomForest-based pred...2446 days ago
LIBSVM -- A Library for Support Vector Machines
LIBSVM is an integrated softwa...ort vector classification, (C-SVC, nu-SVC), regression (epsilon-SVR,&n...rder information for training SVM. Journal of Machine Learning...om other fields to easily use SVM as a tool. LIBSVM ...www.csie.ntu.edu.tw/~cjlin/libsvm/2430 days ago
Genomicus: genome browser that enables users to navigate in genomes in several dimensions
Genomicus is a genome browser that enables users to navigate in genomes in several dimensions: linearly along chromosome axes, transversaly across different species, and chronologic...2322 days ago
Mugsy: multiple whole genome alignment tool
...Seqan::TCoffee. Mugsy accepts draft genomes in the form of multi-FASTA files and does not require a reference genome. To cite Mugsy, use: Angiuoli SV and Salzberg SL. Mugsy:...2302 days ago
SVfinder: Tool for detecting genomic rearrangement form DNA-seq data
SVfinder provides genome-wide detection of structural variants from next generation paired-end sequencing reads.2296 days ago
SMASH: An alignment-free tool to find and visualise rearrangements between pairs of DNA sequences
...ached with a tool (also called SMASH). For visualization, SMASH outputs a SVG image, with an ideogram output architecture, where the patterns are represented with several HSV values (only value varies). T...2289 days ago
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NGMLR: long-read mapper designed to align PacBio or Oxford Nanopore
..., including those spanning (complex) structural variations. Ngmlr uses an SV aware k-mer search to find ap...reads to a wide range of different structural variations including nested SVs (e.g. inversions flanked by...2164 days ago
LAMSA: fast split read alignment with long approximate matches
...h with faster speed and good ability of handling SV events. It is well-suited to...MSA takes takes the advantage of the rareness of SVs to implement a specifically...has good ability to handle various categories of SVs. LAMSA is open source and...2144 days ago