3473 days ago
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irishgrid: Irish Grid Mapping System
Perl module for creating geographic 10km-square maps using either SVG or PNG (with GD library) output format. Originally design to map the location of objects in a 10 km map IrishG...3402 days ago
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Smash: An alignment-free method to find and visualise rearrangements between pairs of DNA sequences
...igh context order (typically 20). For visualisation, Smash outputs a SVG image, with an ideogram...utput architecture, where the patterns are represented with several HSV values (only value varie...2915 days ago
YASS :: genomic similarity search tool
...izable output filter for low complexity repeats reporting of various alignment statistical parameters (mutation bias along triplets, transition/transversion) post-processing step...2909 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
...deletions. To support the growing interest in larger structural variant (SV) discovery, MOSAIK provides explicit support for handling known-sequence SVs, e.g. mobile element inserti...2891 days ago