Results for "SV"
Top-level pages
Quick next generation sequencing (NGS) terms definition
...a;min,δmax]. Most (>90%) of paired-end reads are sampled from no-SV regions, therefore the fragme...ant. Note that, by definition, the discordant read pairs signal potential SVs. The sequence signature prod...2507 days ago
Awesome perl frameworks, libraries and software - PART 1
...nbsp;- A community AWS SDK for Perl Programmers sveinbjornt/Data-URL-Toolkit&nbs...pilable, company friendly, security kbh3rd/shptosvg - Shapefile to SVG rend...p;- Omni completion tool for Perl zigorou/perl-JSV - JSON Schema implementa...2474 days ago
- ...se consult the R documentation. > help(read.table) CSV File The sample data can also be in comma separated values (CSV) format. Each cell inside suc...
2474 days ago
Converting BLAST output into CSV
.../ngs-scripts/, and you’re looking to run the script blast/blast-to-csv.py using Python: python /root/ngs-scripts/blast/blast-to-csv.py out.txt This output...2322 days ago
List of visualization tools for network biology
Network analysis is any structured technique used to mathematically analyze a circuit (a “network” of interconnected components). The Network an...2273 days ago
List of visualization tools for genome alignments
...d visualization of sequencing data http://wanglab.ucsd.edu/star/browser SVA Software for annotating and visualizing sequenced human genomes http://www.svaproject.org Viewer (IGV)&nbs...2269 days ago
Awk for Bioinformatician and computational biologist
...limited by semicolon.Say you have data.tsv with the following contents: $ cat data/test.tsvcontig1 ACTGTCTGTCACTGTGTTGTGA...","$2;}END{print "-------"}' data/test.tsvHeader,Sequencecontig1,ACTGTCT...;0) print "BEGIN:"k}{print}' data/test.tsvBEGIN:contig1 ACTGTCTGTCACTGTG...2265 days ago
Python learning resources for bioinformatics and computational biologist !
Python is a general-purpose language, which means it can be used to build just about anything, which will be made easy with the right tools/libraries. Professionally...2240 days ago
Some useful Bioinformatics links
...of nanopore sequencing reads with GraphMap | Nature Communications https://www.nature.com/articles/ncomms11307 lumpy-sv/extractSplitReads_BwaMem at master · arq5x/lumpy-sv https://github.com/arq5x/lum...2226 days ago
Installing Bio::SCF perl module
...pointer to integer of different size [-Wpointer-to-int-cast] ret_val = newSViv((int)scf_data); ^/usr/lib/x...gnu/perl/5.22/CORE/embed.h:402:40: note: in definition of macro ‘newSViv’ #define newSViv(a) P...2203 days ago
