Transpose the file coordinates and plot dendrogram in R
#Save this as tr.awk { for (i=1; i2580 days ago
Read a tab delimited file and search with perl
use strict; use warnings; use Data::Dumper; use Text::CSV; use IO::Handle; my $file = "/home/urbe/Tools/Alienomics_v0.1/Alienomics/output/intermediate_files/rRNA/refGene.megablast"; open my $fh, "[0]\n"; warn Dumper $row; # To see the structure }2488 days ago
2432 days ago
Perl script to find palindromic regions in DNA sequences
use strict; use warnings; my $pp = qr/(?: (\w) (?1) \g{-1} | \w? )/ix; my $filename = $ARGV[0]; open(my $fh, '2117 days ago
Perl script to find the distance beetween all the contigs and scaffolds
...t my ($seqRef, $ids) = fastafile2hash('MAFFT_out'); my ($fval, $sval) = trimMSA($seqRef->{$ids->...1 = substr $seqRef->{$ids->[0]}{seq}, $fval, ($seqRef->{$ids->[0]}{len}-$sval)-$fval; my $seq2 = subs...2103 days ago
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