Results for "SV"
Comments
Comment on "Tools for RNA classification"
...provides a comprehensive resource for RNA classification. RNAcode: RNAcode is a machine learning-based tool that uses a support vector machine (SVM) algorithm to classify RNA s...411 days ago
Comment on "List of non-commercial NGS genotype-calling software"
Delly – Structural variant discovery by integrated paired-end and split-read analysis. [ paper-2012 ] lumpy – lumpy: a general probab...1133 days ago
- ...ng run info, abundance esimates, bootstrap estimates, and transcript length information length. This file can be read in by sleuth abundances.tsv is a plaintext file of t...
1351 days ago
Comment on "Setting up autoConTAMPR !"
...tistics::ChiSquare && cpan install Text::CSV ---> Running in 89e48...erated on Sun, 24 May 2020 12:41:03 GMTRunning install for module 'Text::CSV'Running make for I/IS/ISHIGAK...1432 days ago
Comment on "Install Zef for Raku !"
...# upgrade all distributions (BETA) zef upgrade # list all available distributions zef list # search for distribution names matching `CSV` zef search CSV ...1541 days ago
Comment on "NGMLR: long-read mapper designed to align PacBio or Oxford Nanopore"
...63cfef?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAIWNJYAX4CSVEH53A%2F20200203%2Fus-east-1%2...63cfef?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAIWNJYAX4CSVEH53A%2F20200203%2Fus-east-1%2...1544 days ago
Comment on "LAMSA: fast split read alignment with long approximate matches"
...e between neighboring seeding fragments. [100] -p --max-loci [INT] Maximum allowed number of seeding fragments' hits. [200] -V --SV-len [INT] Expected maximum length of SV. [10000] -v --ovlp-rat [FLOAT...2113 days ago
Comment on "poRe: an R package for the visualization and analysis of nanopore sequencing data"
...n R, which is very easy: R source("http://www.bioconductor.org/biocLite.R") biocLite("rhdf5") install.packages(c("shiny","bit64","data.table","svDialogs")) q() R may ask i...2165 days ago
Comment on "Basic command-line to run BLAST"
...o_sapiens/protein ... done.==> SIZE protein.fa.gz ... 12021576==> PASV ... done. ==> RETR protein..._musculus/protein ... done.==> SIZE protein.fa.gz ... 10463933==> PASV ... done. ==> RETR protein...2234 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
This synteny visualization tool is relatively new and intersting http://cas-bioinfo.cas.unt.edu/mgsv/2640 days ago
