Results for "Samtools"
Comments
Comment on "Setting up autoConTAMPR !"
......Setting up phyml (2:20120412-2) ...Setting up primer3 (2.3.6-1) ...Setting up probalign (1.4-3) ...Setting up probcons (1.12-9) ...Setting up samtools (0.1.19-1) ...Setting up sim4...1432 days ago
- ...bsp; samtools [-f INT=0] [-F INT=4] [-q INT...sp; Apply samtools filters to alignment tracks c...
1511 days ago
- Understaning SAMtools http://www4.ncsu.edu/~rosswhet/BIT815/Overview/Week2/SAMformatAndCLtools.pdf
1972 days ago
Comment on "Nanopolis: polish a genome assembly"
...ome bwa index draft.fa # Align the basecalled reads to the draft sequence bwa mem -x ont2d -t 8 draft.fa reads.fa | samtools sort -o reads.sorted.bam -T reads.tmp - samtools index reads.sorted.bam pytho...2090 days ago
Comment on "SPAdes hybrid genome assembly"
...-nanopore minion.pass.2D.fastq -o SPAdes_hybrid & Use samtools to extract the top contig: head -n 1 SPAdes_hybrid/contigs.fasta samtools faidx SPAdes_hybrid/contigs.f...2165 days ago
- Samtool WIKI http://davetang.org/wiki/tiki-index.php?page=SAMTools
2857 days ago
- SAM file description https://samtools.github.io/hts-specs/SAMv1.pdf
2857 days ago
Comment on "List of popular bioinformatics software/tools"
SAMtool quick tutorial at http://davetang.org/wiki/tiki-index.php?page=SAMTools http://samtools.sourceforge.net/samtools.shtml3639 days ago
Comment on "Next Generation Sequencing (NGS) Tutorials"
Samtools & Gbrowse2 for NGS tutorial http://gorgonzola.cshl.edu/pfb/2010/LectureNotes/ngs2/ngs2.pdf3895 days ago
