Results for "Scaffolds"
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Genome Assembly Tools and Software - PART1 !!
...red-end reads to connect repeat contigs into scaffolds, also provide the average cov...ol Scaffold_builder was designed to generate scaffolds (super contigs of sequences j...ly pipeline to automatically break incorrect scaffolds and flag other errors in an a...2669 days ago
Tools for bacterial whole genome annotation
...nd orientates contigs and estimates the sizes of gaps between them; (ii) IMAGE uses paired-end reads to extend contigs and close gaps within the scaffolds; (iii) ICORN for identifying...2315 days ago
- ...en[$0]++' To sum assembly size from SPAdes contigs.fasta or scaffolds.fasta file: grep "^>" scaffolds.fasta | cut -f 4 -d '_' | pas.... here lenght >= 4000 + coverage >=100): grep "^>" scaffolds.fasta | sed s"/_/ /"g | awk '...
2200 days ago
- ...####[Mon May 7 11:29:34 2018] Gap closing... iteration 1.1: test/run1/scaffolds.fa 1 99133 39.344 1 99133 991...us size [%] homozygous contigs [%][WARNING] Nothing reduced!test/run1/scaffolds.filled.fa 99390 1 0 0.00 0 0....
2173 days ago
