Results for "Scores"
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...igs and defines a primary assembly based on multiple pairwise contig alignment metrics. HapSolo evaluates candidate primary assemblies using BUSCO scores and then distinguishes among...1076 days ago
- ...is a collection of libraries and high-quality end-user scripts for bioinformatic analysis, including working with gene annotation, collecting data scores from a variety of modern file...
2981 days ago
Ensembl comparative genomics resources
...ysis of chordate genome data. Ensembl computes pairwise and multiple whole-genome alignments from which large-scale synteny, per-base conservation scores and constrained elements are...2972 days ago
- ...e a lineage probability index (LPI) score for each genome protein. LPI scores are inversely proportional to...c distance between database match sequences and the query genome. These scores are useful not only for large...
2858 days ago
- ...13 modules focused on analytical tasks like performing upper-quantile normalization on expression data or convert genome wide gene expression to z-scores when comparing expression dat...
2850 days ago
- ...rmat is a text-based format for storing both a biological sequence (usually nucleotide sequence) and its corresponding quality scores. Both the sequence letter and...
2543 days ago
SuRankCo: supervised ranking of contigs in de novo assemblies
...contigs from de novo assemblies of next generation sequencing data. It trains with alignments of contigs with known reference genomes and predicts scores and ranking for contigs which...2522 days ago
- ...reads or containing a minor allele supported by only one read. Performance comparison with existing tools showed that Heap achieved the highest F-scores with low coverage (7X) restri...
2191 days ago
- ...for analysis of germline variation in small sets of individuals and somatic variation in tumor/normal sample pairs. Manta discovers, assembles and scores large-scale SVs, medium-sized...
2152 days ago
transrate: Understanding your transcriptome assembly
...bly quality analysis. It examines your assembly in detail and compares it to experimental evidence such as the sequencing reads, reporting quality scores for contigs and assemblies. T...2106 days ago
