Results for "Search"
Bio-Scripts
Retrieve NCBI GenBank records with a range of accession numbers
#!/usr/bin/perl #FILE: ncbi_search.pl #AUTH: Paul Stothard (paul.s...ri_escape( $param{query} ); _doSearch(%param); sub _doSearch { my %param = @_; my $esearch = "$param{url}/esearch.fcgi?d...die("Too many failures--giving up search."); }...2906 days ago
Blast result parser with Perl and Bioperl
...parse a NCBI blastx output file and output the top N hits of each blast search result. # For each hit, the...owsing and further analysis. # use strict; use warnings; use Bio::SearchIO; # Usage information di...2904 days ago
Perl script to extract lines with matching ids !!
#!/usr/bin/perl use strict; use warnings; my %patterns; #USAGE: perl extactByIds.pl Idsfile1 file2 > Result # Open file and get patterns to search for open(my $fh2,"2865 days ago
Install ATOM editor on Elemantory OS / Ubuntu
...init, install, link, linked, links, list, ln, lns, login, ls, open, outdated, prune, publish, rebuild, rebuild-module-cache, remove, rm, search, show, star, starred, stars,...1166 days ago
Read a tab delimited file and search with perl
use strict; use warnings; use Data::Dumper; use Text::CSV; use IO::Handle; my $file = "/home/urbe/Tools/Alienomics_v0.1/Alienomics/output/intermediate_files/rRNA/refGene.megablast"; open my $fh, "[0]\n"; warn Dumper $row; # To see the structure }2515 days ago
Perl script to run SATSUMA in loop !
#!/usr/bin/perl -w use strict; use File::Temp qw(tempfile); # Usage perl 1by1.pl for SATSUMA analysis # User need to set the reference multifasta file name here...2130 days ago
Install Parrot Virtual Machine !
...8.1.0$ ./parrot -h parrot [Options] [] Options: -h --help -V --version -I --include add path to include search -L --library add path to library search --hash-seed F00F spe...1527 days ago
Installing Porechop on Ubuntu !
...ads or a directory which will be recursively searched for FASTQ files (required)...ng a "none" bin) (default: False) Adapter search settings: Control how the...2096 days ago
- ...| 100 ++++++++++++++++++--------- plugins/frontend-search/README.md | 12 ++-- plugins/frontend-search/frontend-search.plugin.zsh...
2065 days ago
Install Samtools, Bcftools and htslib on Ubuntu !
#Inspired from online search sudo apt-get update sudo apt-get install gcc sudo apt-get install make sudo apt-get install libbz2-dev sudo apt-get install zlib1g-dev sudo apt-...1548 days ago
