Results for "Search"


  • NCBI PSI-BLAST Tutorial Tutorial for PSI-BLAST, an extension of BLAST that uses matrix algebra. BLAST is a cornerstone bioinformatics tool at NCBI. BLAST is the Basic Local Alignment Search tool and will protein and DNA sequences that are related to a sequence that the user provides.

    Tags: PSI Blast, BLAST, NCBI, Alignment, Search, Sequence

    1646 days ago

  • How to find a files in a folder or sub folders?

    Hi Bioinformaticians,  I am new to bioinformatics and Perl. So, please execuse me if I disturb you all with newbie question. I am strugling to find a specific files (cattle_genome.fasta) from a folder and sub folders, and read it. I got some of the help form this website http://s...

    Tags: Recursively Search, Folders, Sub Folder, Find, Read, Search, Perl.

    1661 days ago

  • Bioinformatics Codes Search

    I bet, this website will be your best friend in near future. This helps us to explore the existing open source codes and learn from it. You can find some useful open source bioinformatics codes for your analysis work. You can use the left bar options to filtere out or narrow down your search res...

    Tags: Koders, Coders, Bioinformatics Scripts, Open Source Codes, Computational Biology, Scripts, Search, Code Search

    1654 days ago

  • Find certain files/documents in Linux OS

    As bioinformatician I know the fact that we usually handle the large dataset and lost in the huge numbers of files and folders. In order to search the missing file a strong search command is required. The Linux Find Command is one of the most important and much used command in Linux sytems. Find ...

    Tags: Bioinformatics, Computational Biology, Linux, Find, Search, Look, Example

    1419 days ago

  • Search Shell Command History

    We use couple of hundreads of command in daily basis. Most of them are actually repeated several time. The question remain open how do I search old command history under bash shell and modify or reuse it? Now a days almost all modern shell allows you to search command history if enabled by user. ...

    Tags: Bioinformatics, Computational Biology, Linux, History, Search, Find, Delete, Shell, Command

    1353 days ago

  • Marine Microbial Diversity Database of India #NIO #GOI #Database #Marine #Search

    Tags: NIO, GOI, Database, Marine, Search

    1284 days ago

  • Search a PATTERN in a file and print the line. perl -ne '/PATTERN/ && print' fileName #Perl #Pattern #Print #Search #Line

    Tags: Perl, Pattern, Print, Search, Line

    1252 days ago

  • How to search for small peptide (hexapeptide) sequence ?

    How to search for small peptide (hexapeptide) sequence which are modified by single D-amino acid replacement from parent peptide sequence? Which database or tool is available to find available sequence similarity?? The parent peptide sequence is a part of human protein with all six L-amino acid ...

    Tags: Hexapeptide, Sequence, Search, Peptide, Database, Tool, Find, Similarity

    962 days ago

  • Efficient genome searching with Biostrings and the BSgenome data package

    Tags: BioStrings, R, Search, Pattern, Genome, Chromosome, Bioinformatics

    719 days ago

  • Tools for Searching Repeats And Palindromic Sequences

    In genetics, the term palindrome refers to a sequence of nucleotides along a DNA (deoxyribonucleic acid) or RNA (ribonucleic acid) strand that contains the same series of nitrogenous bases regardless from which direction the strand is analyzed. Akin to a language palindrome—wherein a word o...

    Tags: Bioinformatics, Search, Repeats, Palindromic, Sequences, Tools, Software

    643 days ago